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Fig. 3 | BMC Genomics

Fig. 3

From: Understanding host response to infectious salmon anaemia virus in an Atlantic salmon cell line using single-cell RNA sequencing

Fig. 3

Response to ISAV in the Atlantic salmon SHK-1 cell line. (A) UMAP dimensionality reduction plot showing the clustering of the cells according to the host cell transcriptome; (B) Heatmap showing the expression pattern of the top marker genes for each cell cluster; (C) Barplot with the fold enrichment of selected KEGG pathways in each cell cluster, ordered within each cluster according to their significance; (D) Ridgeplot showing the proportion of the transcriptome that represent the two sets of “Ribosome” genes (KEGG pathway) enriched in (i) cluster 1 and (ii) cluster 5

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BMC Genomics

ISSN: 1471-2164

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