A high-quality chromosome-level Eutrema salsugineum genome, an extremophile plant model

BMC Genomics

Table 1 A comparison of the three E. salsugineum genome assemblies

Assembly feature	EsaV1 (NCBI_TsV2-8)	EsaV2 (Phytozome_173_v1)	EsaV3 (This study)
Assembly length	231.9 Mb	243.1 Mb	295.5 Mb
Total ungapped length	208.9 Mb	238.4 Mb	295.1 Mb
Percentage of gaps	9.92%	1.93%	0.14%
BUSCO score for assembly	97.4%	99.2%	99.1%
Number of scaffolds	2663	638	655
Scaffold N50	0.40 Mb	13.44 Mb	36.82 Mb
Scaffold L50	117	8	4
Number of contigs	28,682	3,658	1,479
Contig N50	0.03 Mb	0.22 Mb	3.05 Mb
Contig L50	1,496	311	29
Predicted gene models	28,457	26,351	25,399
BUSCO score for predicted gene models	95.8%	99.1%	97.2%
Total exon	149,079	137,652	136,411
Exons per gene	5.23	5.22	5.37
Mean gene length	2,041 bp	2,209 bp	2,559 bp

ISSN: 1471-2164