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Table 2 Top 10 KEGG pathways with DEGs under each stress

From: Comparative transcriptomic analysis of germinating rice seedlings to individual and combined anaerobic and cold stress

AG stress

Cold stress

 

Combined AG and Cold stress

KEGG Pathway name

Enrichment FDR

KEGG Pathway name

Enrichment FDR

KEGG Pathway name

Enrichment FDR

Hydrogen peroxide catabolic process

8.60E-06

Carboxylic acid metabolic process

3.10E-10

Amide biosynthetic process

4.30E-43

Detoxification

3.90E-07

Small molecule metabolic process

3.60E-17

Translation

7.10E-38

Anion transmembrane transport

1.50E-06

Oxoacid metabolic process

1.50E-10

Peptide biosynthetic process

7.20E-38

Response to toxic substance

3.10E-07

Organic acid metabolic process

1.80E-10

Peptide metabolic process

3.00E-34

Cellular response to toxic substance

7.60E-07

Carbohydrate metabolic process

3.10E-10

Cellular amide metabolic process

4.80E-38

Cellular detoxification

7.60E-07

Organonitrogen compound biosynthetic process

1.90E-13

Organonitrogen compound biosynthetic process

1.40E-51

Small molecule catabolic process

3.70E-06

Response to stress

6.10E-15

Small molecule metabolic process

7.10E-33

Cellular oxidant detoxification

1.40E-05

Response to chemical

3.80E-10

Cellular nitrogen compound biosynthetic process

3.70E-54

Response to oxidative stress

5.30E-06

Organic substance biosynthetic process

2.20E-26

Cellular biosynthetic process

1.10E-66

Response to chemical

1.90E-11

Cellular nitrogen compound biosynthetic process

1.90E-17

Organic substance biosynthetic process

8.20E-66

Carbohydrate metabolic process

4.40E-09

Response to stimulus

8.30E-18

Cellular macromolecule biosynthetic process

5.30E-45

Cellular response to chemical stimulus

1.40E-06

Cellular biosynthetic process

4.00E-25

Macromolecule biosynthetic process

9.00E-45

Transmembrane transport

4.70E-10

Biosynthetic process

4.00E-25

Biosynthetic process

2.10E-62

Oxidation-reduction process

1.90E-11

Cellular macromolecule biosynthetic process

2.10E-15

Cellular protein metabolic process

2.50E-53

Small molecule metabolic process

7.40E-08

Macromolecule biosynthetic process

1.30E-14

Gene expression

9.00E-42

Catabolic process

1.80E-07

Regulation of cellular process

2.90E-12

Cellular nitrogen compound metabolic process

1.20E-55

Response to stimulus

1.60E-09

Regulation of biological process

8.50E-12

Protein metabolic process

1.70E-48

Localization

1.80E-07

Biological regulation

6.00E-13

Response to stimulus

3.30E-31

Transport

6.70E-07

Cellular protein metabolic process

3.10E-10

Heterocycle metabolic process

5.70E-31

Establishment of localization

1.00E-06

Cellular nitrogen compound metabolic process

3.20E-12

Organic cyclic compound metabolic process

8.60E-30