Fig. 8

Performance of analysis tools. (A) Serotype prediction and GT annotation of various strains. For easy viewing, only the first 300 kb are shown. Two sequences are shown for each strain, including the analysis results and the information stored in the RefSeq database. (B) Serotype prediction in artificial genomes. The genome sequence of O101 strain was divided into fragments 101A (anterior) and 101B (posterior). The genome sequence of O162 strain was divided into fragment 162A (anterior) and 162B (posterior). The antigen synthesis gene cluster of O162 (denoted by O162) was also involved in the predictive analysis. Antigen synthesis gene clusters are marked in rectangular form, with red and yellow representing entire and partial gene clusters, respectively. (C) GT prediction effect of sequence with incomplete antigen. The recombined genome contains the anterior part of E. coli 2012C-4221 and the posterior part of E. coli 6409