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Fig. 4 | BMC Genomics

Fig. 4

From: De novo full-length transcriptome analysis of two ecotypes of Phragmites australis (swamp reed and dune reed) provides new insights into the transcriptomic complexity of dune reed and its long-term adaptation to desert environments

Fig. 4

Overview of the RNA-seq data analysis for 24 reed leaf samples. A Principal component analysis based on gene expression. Each data point represents an individual reeds of leaf samples. B Expressed genes (top 1000) hierarchical clustering diagram in 24 reeds leaf samples. The RPKM matrix of the expressed genes was processed by the scale function with centers and scales. C Volcano plot of differentially expressed genes in wild-type reeds versus homogenous cultivation reeds, and the genes with significant differential expression are represented by red dots (up-regulated) and blue dots (down-regulated), P-value < 0.05, |log2 (fold change) |> 1

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BMC Genomics

ISSN: 1471-2164

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