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Table 4 Frequencies of different EST-SSR repeat motifs types observed in All UniTransModels

From: De novo full-length transcriptome analysis of two ecotypes of Phragmites australis (swamp reed and dune reed) provides new insights into the transcriptomic complexity of dune reed and its long-term adaptation to desert environments

SSR motif

Repeats number

Number of SSRs

Percentage (%)

5

6

7

8

9

10–20

 > 20

Sin-nucleotide

0

0

0

0

0

3,653

59

3,712

46.22

Di-nucleotide

0

613

295

223

130

401

94

1,756

21.86

Tri-nucleotide

1,471

528

192

77

37

16

0

2,321

28.90

Tet-nucleotide

99

28

6

1

0

1

0

135

1.68

Five-nucleotide

51

11

1

0

0

0

0

63

0.78

Six-nucleotide

41

3

0

0

0

1

0

45

0.56

Total

1,662

1,183

494

301

167

4,072

153

8,032

100.00

Percentage (%)

20.69

14.73

6.15

3.75

2.08

50.70

1.90

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