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Table 5 Isoforms the number statistics of different alternative splicing types in SR and DR

From: De novo full-length transcriptome analysis of two ecotypes of Phragmites australis (swamp reed and dune reed) provides new insights into the transcriptomic complexity of dune reed and its long-term adaptation to desert environments

 

RI

SS

SE

FL

MX

Total

A5SS

A3SS

AF

AL

SR

1,865

60.91%

520

16.98%

562

18.35%

83

2.71%

18

0.59%

12

0.39%

2

0.07%

3,062

DR

128

47.94%

79

29.59%

47

17.60%

11

4.12%

2

0.75%

0

0

267

  1. Unlike the identification of AS events based on genome identification, these AS events use the UniTransModels as a reference
  2. SE Skipping exon, RI Retained intron, SS Alternative 5' (A5) or 3'(A3) splice sites, FL Alternative First (AF) and Last (AL) exons, MXE Mutually Exclusive (MX) exons
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BMC Genomics

ISSN: 1471-2164

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