Table 1 Statistics, quality and RNA-Seq assembly results of 12 RNA sequencing libraries in different color maize varieties
Sample | Raw Reads | Clean Reads | Clean Base (G) | Error Rate (%) | Q20 (%) | Q30 (%) | GC Content (%) | Reads mapped |
|---|---|---|---|---|---|---|---|---|
P-1 | 49,714,966 | 48,713,390 | 7.31 | 0.02 | 98.26 | 94.64 | 54.56 | 44,390,230(91.13%) |
P-2 | 51,957,970 | 50,768,754 | 7.62 | 0.02 | 98.47 | 95.17 | 53.99 | 46,294,944(91.19%) |
P-3 | 43,694,822 | 42,524,096 | 6.38 | 0.02 | 98.25 | 94.59 | 54.8 | 38,643,525(90.87%) |
R-1 | 47,480,608 | 46,721,244 | 7.01 | 0.02 | 98.14 | 94.31 | 57.07 | 40,522,730(86.73%) |
R-2 | 46,743,908 | 45,767,870 | 6.87 | 0.02 | 98.34 | 94.93 | 57.21 | 39,486,116(86.27%) |
R-3 | 42,128,348 | 41,340,490 | 6.2 | 0.02 | 98.25 | 94.68 | 56.69 | 35,925,885(86.90%) |
W-1 | 45,094,272 | 44,217,510 | 6.63 | 0.02 | 98.23 | 94.52 | 55.6 | 39,729,487(89.85%) |
W-2 | 49,294,122 | 48,267,112 | 7.24 | 0.02 | 98.28 | 94.64 | 55.24 | 43,486,105(90.09%) |
W-3 | 45,642,886 | 44,773,192 | 6.72 | 0.02 | 98.08 | 94.17 | 55.2 | 40,259,033(89.92%) |
Y-1 | 44,677,430 | 43,805,566 | 6.57 | 0.02 | 98.26 | 94.66 | 55.64 | 39,645,741(90.50%) |
Y-2 | 47,956,890 | 47,250,810 | 7.09 | 0.02 | 98.36 | 94.87 | 55.69 | 42,786,601(90.55%) |
Y-3 | 45,326,632 | 44,487,150 | 6.67 | 0.02 | 98.27 | 94.67 | 56.12 | 40,292,327(90.57%) |