Table 1 Sequence characterization of Dicer-like, Argonaute and RNA dependent RNA polymerase genes identified in adzuki bean

DICER-like

    1

VaDCL1

scaffold635:359,217:372,167

5874

1957

219,311.2

6.76

20

    2

VaDCL2a

Chr3:17,402,852:17,413,213

4335

1444

163,687.3

7.23

23

    3

VaDCL2b

Chr9:21,152,788:21,160,150

2262

753

85,811.6

6.43

10

    4

VaDCL2c

Chr9:23,164,541:23,180,126

4155

1384

157,192.2

7.35

22

    5

VaDCL2d

Chr9:23,194,981:23,205,383

3123

1040

118,192.8

6.83

15

    6

VaDCL3

Chr4:32,320,440:32,332,783

3891

1296

144,853.2

6.81

17

    7

VaDCL4

Chr1:33,082,926:33,098,869

4089

1362

153,586.7

6.58

19

ARGONAUTES

    1

VaAGO1

Chr10:4,678,432:4,683,786

3195

1064

117,653.8

9.61

21

    2

VaAGO3a

Chr1:18,556,195:18,559,446

3015

1004

112,723.5

9.19

3

    3

VaAGO3b

Chr9:23,653,089:23,656,520

2625

874

99,182.9

8.92

2

    4

VaAGO4a

Chr7:3,626,555:3,633,798

2892

963

107,595.7

8.81

23

    5

VaAGO4b

Chr10:7,424,989:7,431,762

2790

929

103,779.2

8.62

22

    6

VaAGO6

Chr8:5,397,780:5,408,800

2232

743

83,015.5

8.05

19

    7

VaAGO7a

Chr6:14,871,442:14,875,963

2970

989

113,078.9

9.46

3

    8

VaAGO7b

Chr6:14,904,177:14,907,071

2730

909

103,408.6

9.32

2

    9

VaAGO10a

Chr1:34,889,624:34,897,482

2766

921

104,373.7

9.14

23

    10

VaAGO10b

Chr2:30,116,181:30,123,164

2907

968

108,729.5

9.50

21

    11

VaAGO10c

Chr4:4,313,319:4,319,788

2739

912

103,698.1

9.35

22

RNA-DEPENDENT RNA POLYMERASES

    1

VaRDR1a

Chr6:18,814,093:18,819,600

3396

1131

128,889.9

7.75

4

    2

VaRDR1b

Chr6:18,829,832:18,836,641

3351

1116

127,820.1

8.70

4

    3

VaRDR1c

Chr6:18,860,275:18,865,547

3399

1132

129,917.7

8.71

4

    4

VaRDR2

Chr1:32,133,579:32,137,755

3360

1119

127,573.9

6.85

4

    5

VaRDR3

Chr10:654,766:666,294

2925

974

111,060.8

6.90

18

    6

VaRDR6

Chr4:31,005,786:31,009,780

3615

1204

137,237.4

7.85

2