Table 1 Accession numbers and associated manuscripts for published data analyzed for this study
Experiment | Associated Manuscript | Accession Number |
|---|---|---|
MNase-seq | ||
E14 MNase-seq | Blümli et al. 2021 | GSE183278 |
HeLa MNase-seq | Kato et al. 2017 | DRP003456 |
ChIP-seq | ||
BRG1 ChIP-seq | de Dieuleveult et al. 2016 | GSE64825 |
CHD1 ChIP-seq | de Dieuleveult et al. 2016 | GSE64825 |
SNF2H ChIP-seq | Song et al. 2022 | GSE123670 |
RNAPII ChIP-seq | Hodges et al. 2018 | GSE98605 |
CTCF ChIP-seq | Chen et al. 2008 | GSE11431 |
OCT4 ChIP-seq | Marson et al. 2008 | GSE11724 |
SOX2 ChIP-seq | Marson et al. 2008 | GSE11724 |
KLF4 ChIP-seq | Chen et al. 2008 | GSE11431 |
NANOG ChIP-seq | Marson et al. 2008 | GSE11724 |
H3K4me1 ChIP-seq | Davis et al. 2018 | GSE31039 |
H3K36me3 ChIP-seq | Davis et al. 2018 | GSE31039 |
RNA-seq | ||
SNF2H KO RNAseq | Barisic et al. 2019 | GSE112136 |
BRG1 KO RNAseq | Hodges et al. 2018 | GSE98469 |
TT-seq | ||
E14 TT-seq | Klein et al. 2022 | GSE181624 |
E14 TT-seq | Blümli et al. 2021 | GSE183278 |
DNase I Hypersensitive Sites | ||
E14 DHSs | Davis et al. 2018 | GSM1014154 |
HeLa DHSs | Davis et al. 2018 | GSE90432 |