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Table 1 Traits with their abbreviations, full descriptions, corresponding trait group and descriptive statistics of the drEBV

From: Comparison of two multi-trait association testing methods and sequence-based fine mapping of six additive QTL in Swiss Large White pigs

Trait group

Acronym

Full name [unit of raw records]

Na

Nb

Mean ± SDb

Min, Maxb

h2 ± SEa

FDR

Reproduction

PSP

Stillborn piglets [%]

2,886

2,610

0.4 ± 3.57

-9.46, 19.63

0.07 ± 0.01

-

PUP

Underweight (< 1 kg) piglets [%]

2,886

2,554

0.88 ± 3.20

-13.83, 18.29

0.09 ± 0.01

2.50

NBA

Piglets born alive [number]

2,886

2,697

2.46 ± 1.46

-4.04, 8.35

0.13 ± 0.01

-

GL

Gestation length [days]

2,886

2,866

0.55 ± 0.88

-2.77, 5.18

0.29 ± 0.02

5.00

Production

MAS

Meat surface in longissimus dorsi [cm2]

5,457

3,829

-3.71 ± 3.35

-15.17, 12.13

0.53 ± 0.02

5.00

IMF

Intramuscular fat content in MAS [%]

5,422

3,335

0.23 ± 0.53

-1.99, 2.92

0.52 ± 0.01

1.67

DRL

Drip loss [%]

5,515

3,595

0.86 ± 1.57

-6.12, 7.32

0.43 ± 0.02

-

LMC

Lean meat content [%]

5,468

5,155

0.19 ± 1.87

-10.34, 8.53

0.46 ± 0.02

0.18

PH24

pH 24 h postmortem in the loin

4,615

2,729

0 ± 0.05

-0.20, 0.20

0.06 ± 0.01

-

ADFI

Average daily feed intake [kg/day]

5,467

5,109

0 ± 0.15

-0.67, 0.62

0.37 ± 0.01

0.10

DWG

Daily weight gain on test [g/day]

5,467

5,008

10.72 ± 68.15

-256.11, 347.54

0.24 ± 0.02

0.15

LDWG

Lifetime daily weight gain [g/day]

5,468

5,399

14.27 ± 31.06

-113.33, 168.03

0.23 ± 0.02

0.11

MT

Loin muscle thickness [mm]

5,467

3,944

-2.25 ± 1.74

-8.07, 5.58

0.09 ± 0.01

5.00

BFT

Back fat thickness [mm]

5,468

5,120

-0.87 ± 1.95

-8.96, 7.7

0.47 ± 0.01

0.25

Conformation

WSFH

Week to steep fetlock, hind legs c

5,434

2,274

0.06 ± 0.19

-0.82, 0.81

0.05 ± 0.01

-

GAIT

Gait

5,434

2,025

0.39 ± 0.22

-0.83, 1.45

0.08 ± 0.01

-

BFL

Bent to pre-bent curve of forelegs c

5,434

2,581

0.14 ± 0.14

-0.55, 0.87

0.41 ± 0.01

2.50

NEIH

Narrowed (reduced) to enlarged inner hoof, hind claws c

5,430

2,564

0.18 ± 0.13

-0.45, 0.64

0.06 ± 0.01

-

SCH

Sword- to chair-legged, hind legs c

5,434

2,361

0.17 ± 0.17

-0.65, 0.91

0.06 ± 0.01

-

XOH

X- to O-legged (knocked-kneed to bow-legged), hind c

5,434

2,516

0.04 ± 0.12

-0.6, 0.67

0.04 ± 0.01

-

CL

Carcass length [cm]

5,433

3,638

4.11 ± 2.66

-5.25, 14.64

0.67 ± 0.01

0.17

NT

Number of teats (both sides)

5,433

5,419

2.19 ± 0.78

-0.72, 5.03

0.41 ± 0.01

0.25

NIT

Number of inverted teats

5,427

2,721

-0.28 ± 0.21

-1, 0.96

0.09 ± 0.01

5.00

NUT

Number of underdeveloped teats

5,433

2,234

0.01 ± 0.09

-0.27, 0.45

0.09 ± 0.01

2.50

  1. The false discovery rate (FDR) and genomic heritability based on drEBV (h2) were based on array genotypes
  2. abefore filters
  3. bafter filters
  4. craw phenotypes for conformation traits are recorded on a scale from 1 to 7, where 4 represents the optimum value, but phenotypes for genetic evaluation and hence (deregressed) breeding values reflect the deviation from the optimum