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Table 6 Pearson correlations between true “Full_HD” GEBVs and imputed HD GEBVs based on ancestry for the 67 G1 breeders, according to each enzyme used for egg weight (EW), eggshell colour (ESC), eggshell strength (ESS) and albumen height (AH).

From: Restriction site-associated DNA sequencing technologies as an alternative to low-density SNP chips for genomic selection: a simulation study in layer chickens

 

Number of SNPs

EW

ESC

ESS

AH

EcoRI

1,797

0.3774

0.2962

0.3420

0.4261

TaqI

4,126

0.4476

0.2453

0.3906

0.4478

TaqI_PstI

11,193

0.4740

0.2442

0.3869

0.4684

AvaII

12,453

0.4681

0.2430

0.3859

0.4794

PstI

14,390

0.4664

0.2450

0.3953

0.4689

HD SNP chip

300,028

0.4713

0.2460

0.3940

0.4802

  1. The line HD SNP chip corresponds to the Pearson correlation between true “Full_HD” GEBVs and true HD GEBVs based on ancestry for the 67 G1 breeders.
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BMC Genomics

ISSN: 1471-2164

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