Fig. 2
From: scRNASequest: an ecosystem of scRNA-seq analysis, visualization, and publishing
QC plots of the number of genes with greater than 0 counts per cell and total counts, before and after the filtering step. Scatter plot of total counts (X-axis, using the total_counts parameter from Scanpy QC metrics) and the number of genes (Y-axis, using the n_genes_by_counts parameter from Scanpy QC metrics) detected before (A) and after (B) filtering out low-quality cells and lowly expressed genes. Violin plots for each individual sample before (C) and after (D) filtering. The blue lines in C and D show the median counts of all data, with the exact number on top of the plots