Table 3 Summary of cell and gene counts before and after each filtering step
From: scRNASequest: an ecosystem of scRNA-seq analysis, visualization, and publishing
Parameter | Cutoff | Cell count | Gene number |
|---|---|---|---|
MT | 20% | 40,532 | 31,040 |
min.cell | 3 | 40,532 | 25,115 |
min.features | 50 | 40,532 | 25,115 |
highGene.cutoff | 3,000 | 29,561 | 25,115 |
highCount.cutoff | 10,000 | 29,511 | 25,115 |