Table 1 MQTLs associated with stripe rust resistance detected during the present study

MQTL1A.1

150.41–153.18

Kukri_rep_c81545_195/IAAV2838

3 (3)

5.3 (14.83)

FDS, DS/IT, DS

MQTL1A.2

154.09–155.31

IAAV2838/IAAV2838

3 (3)

5.63 (8.43)

DS, DS/IT, AUDPC/IT/SR/LAI

MQTL1A.3

177.32–181.96

wsnp_Ku_c34659_43981982/IWB69234

2 (2)

6.35 (12.15)

DS, IT/DS

MQTL1B.1

94.37–95.30

BS00095286_51/Kukri_c7393_285

5 (5)

12.65 (25.12)

IT/DS (2), IT, DS, AUDPC/IT

MQTL1B.2

145.25–146.93

GENE-1756_115/wsnp_Ex_c14273_22230844

5 (5)

11.08 (16.204)

DS (3), IT, AUDPC/IT

MQTL1B.3

153.68–155.15

wsnp_Ex_c14273_22230844/RFL_Contig4873_542

6 (4)

9.75 (11.18)

DS/IT (2), DS (3), IT

MQTL1B.4

198.58–200.21

BobWhite_c4147_1351/BS00066135_51

3 (3)

6 (10.43)

SR, DS/AUDPC, DS

MQTL1B.5

233.79–235.01

IWB70151/Excalibur_rep_c107001_320

4 (4)

11.81 (23.20)

AUDPC/IT, DS (2), IT/DS

MQTL1D.1

35.08–37.54

wsnp_Ra_c48124_53475145/AX-110276692

2 (2)

8 (21.25)

DS, IT/DS

MQTL1D.2

72.05–72.75

Kukri_c46169_294/AX-109701841

2 (2)

2.94 (1.69)

DS (2)

MQTL1D.3

74.97–77.75

Kukri_c20446_215/AX-110163017

2 (2)

8.55 (9.49)

DS (2)

MQTL2A.1

185.38–185.53

BS00004724_51/wsnp_Ex_rep_c103167_88181968

11 (9)

13.38 (21.18)

AUDPC, DS (6), IT, IT/DS, RT/DS, SR

MQTL2A.2

210.34–214.06

D_GA8KES401BVP4P_43/IAAV2585

2 (2)

13.55 (21.15)

DS (2)

MQTL2A.3

278.26–287.31

BobWhite_c1611_1685/BS00078612_51

3 (3)

12.49 (34.63)

DS/SR, DS/AUDPC, IT

MQTL2A.4

332.98–334.34

AX-110595053/IWB6967

2 (2)

15.525 (13.15)

DS, IT/DS

MQTL2B.1

29.97–32.74

Ku_c2441_1342/BobWhite_c20346_138

4 (4)

4.8975 (19.275)

AUDPC/IT (2), IT, DS

MQTL2B.2

54.87–60.28

RAC875_c8069_1709/Excalibur_c4372_262

2 (2)

4.82 (10.17)

IT, DS/SR

MQTL2B.3

60.96–63.43

BS00066389_51/Excalibur_c39493_251

2 (2)

35.55 (56.9)

DS/IT, DS

MQTL2B.4

100.57–101.86

Kukri_c94792_127/Jagger_c10188_98

11 (9)

12.26 (26.26)

DS/IT, AUDPC/IT/SR/LAI, DS (7), AUDPC/IT, IT/SN

MQTL2B.5

102.84–103.56

RAC875_c16993_196/BS00070050_51

11 (9)

12.43 (26.95)

DS (4), DS/IT, IT/SN (2), RT/DS, AUDPC, FDS/NDVI, DS/RT/NDVI

MQTL2B.6

110.17–110.90

BS00049876_51/Ku_c68139_836

4 (4)

25.16 (36.19)

AUDPC, DS/AUDPC, AUDPC/IT, IT/DS

MQTL2B.7

120.49–122.42

IWB8416/BS00072620_51

2 (2)

8.10 (13.85)

DS, AUDPC/DS

MQTL2B.8

140.21–143.45

AX-94718406/IWB67084

5 (3)

4.61 (7.822)

DS (5)

MQTL2B.9

199.06–201.96

IWB62599/BobWhite_c31708_99

2 (2)

8.33 (18.9)

DS, IT

MQTL2D.1

75.42–78.47

AX-94898597/AX-95176044

2 (2)

13.45 (38.4)

IT, LP/IT

MQTL2D.2

98.67–98.98

RAC875_c11911_431/D_contig28346_467

9 (6)

5.98 (13.75)

IT, DS (5), AUDPC/DS, AUDPC

MQTL3A.1

49.57–51.12

Excalibur_c32653_553/BS00109084_51

2 (2)

4.66 (14.325)

DS/IT, AUDPC/IT

MQTL3A.2

125.99–128.88

3A_s3948706//wsnp_Ra_c9738_16174002/Tdurum_contig75764_146

4 (3)

5.08 (12.27)

SR (2), DS (2)

MQTL3A.3

142.47–143.43

Excalibur_c20448_318/Excalibur_c98205_83

3 (3)

4.53 (8.33)

LP/IT, DS (2)

MQTL3B.1

17.01–18.19

Excalibur_c20277_436/RAC875_rep_c111781_146

3 (3)

8.3 (14.37)

IT/AUDPC, AUDPC/DS, DS

MQTL3B.2

29.78–34.05

BS00011904_51/RAC875_c30148_90

4 (4)

6.1 (10.025)

SR, DS (2), IT/AUDPC

MQTL3B.3

73.84–74.22

BS00075373_51/Tdurum_contig14251_431

16 (11)

8.13 (13.10)

IT (3), SR, DS/IT (5), DS (4), DS/SR (2), AUDPC

MQTL3B.4

74.53–75.31

BS00075373_51/Tdurum_contig14251_431

4 (4)

22.47 (29.18)

RT/DS, IT/DS, DS, IT/DS/AUDPC

MQTL3B.5

92.80–92.83

IWB47273/AX-111655083

9 (7)

6.57 (18.11)

IT/DS/AUDPC, DS (3), DS/SR (2)

MQTL3D.1

77.87–83.56

BS00021930_51 /wPt-3815//AX-108885897

3 (2)

6.4 (10.4)

IT/DS, DS (2)

MQTL3D.2

117.24–119.28

IAAV5635/wPt-666738//IAAV2827

2 (2)

9.2 (12.2)

IT/DS

MQTL4A.1

133.66–134.57

wsnp_Ex_c4752_8482625/AX-108737352

5 (4)

5.65 ((12.18)

DS (3), DS/AUDPC, IT

MQTL4A.2

181.44–182.59

Xiwa2606//IWB27365/SBG_177633//IWA3068

5 (4)

18.18 (16.44)

AUDPC/IT/SR/LAI (2), DS/RT/NDVI, SR, LAI/RT

MQTL4B.1

32.7–34.42

Tdurum_contig61142_146/Ra_c26080_461

4 (4)

4.65 (7.54)

DS (3), DS/IT

MQTL4B.2

52.99–53.38

Tdurum_contig94552_326/Tdurum_contig13165_443

4 (4)

5.13 (6.51)

DS/IR, DS (2), AUDPC

MQTL4B.3

59.74–60.63

Tdurum_contig29989_132/BS00067786_51

4 (4)

11.72 (27.25)

DS (3), DS/IT

MQTL4B.4

62.63–64.06

BS00063804_51/IAAV5175

3 (3)

7.57 (16.77)

DS/IT (2), DS

MQTL4B.5

83.5–86.3

AX-109899078/IWB7491

2 (2)

4.35 (19.85)

DS, AUDPC

MQTL4B.6

104.8–105.74

CAP12_c4704_232/RAC875_c6694_906

2 (2)

15.03 (27.11)

DS, IT/DS/AUDPC

MQTL4B.7

116.01–117.44

IWB46525/Kukri_c18722_425

3 (3)

8.67 (21.87)

DS/SR (2), AUDPC/IT

MQTL4D

93.32–93.67

Kukri_rep_c68594_530/RFL_Contig2917_500

3 (3)

4.19 (5.66)

DS (3)

MQTL5A.1

230.77–232.75

IAAV2080/GENE-3572_70

5 (5)

5.22 (7.46)

AUDPC/IT (2), DS (3)

MQTL5A.2

243–243.86

BobWhite_c17440_130/BS00022110_51

2 (2)

8.9 (4.25)

IT/DS, DS/AUDPC

MQTL5A.3

252.68–254.08

Ex_c6161_335/IWB56891

2 (2)

3.29 (1.88)

DS (2)

MQTL5A.4

262.77–263.05

Xbarc100/IWB31441

4 (4)

9.92 (6.89)

AUDPC/DS, DS, SR, IT/DS

MQTL5A.5

314.26–317.34

BS00085826_51/CRA-4160//IWB14724

4 (4)

4.27 (6.49)

DS (3), IT/DS/AUDPC

MQTL5A.6

372.08–373.41

wsnp_Ex_c18941_27840933/Kukri_c34193_102

2 (2)

22.82 (35.52)

DS, AUDPC/IT

MQTL5B.1

3.165–5.375

IWB65830/wsnp_Ex_c6100_10676217

7 (6)

8.27 (7.99)

DS (4), IT (3)

MQTL5B.2

46.86–47.9

Xgwm544//IWB21416/IWB32919

7 (7)

5.61 (13.68)

SR, DS (3), AUDPC/IT, AUDPC, IT

MQTL5B.3

106.37–108.11

Tdurum_contig5522_455/BobWhite_c15406_510

6 (5)

12.01 (12.96)

DS (4), DS/IT (2)

MQTL5B.4

138.72–138.92

BS00024829_51/RAC875_c14078_202

4 (3)

4.5 (12.02)

SR, AUDPC/IT (2), IT/DS

MQTL5D

301.76–303.55

Excalibur_rep_c73156_287/BS00021911_51

2 (2)

4.62 (8.37)

IT/DS, AUDPC/IT

MQTL6A.1

176.27–178.23

Kukri_c4606_620/BS00084846_51

7 (6)

7.20 (9.03)

DS (4), AUDPC/IT/SR/LAI, IT, LP/IT

MQTL6A.2

186.3–188.46

BS00041481_51/BS00072146_51

2 (2)

8.97 (27.39)

IT/DS, IT

MQTL6A.3

199.27–199.95

BS00064548_51/BS00037006_51

3 (3)

4.47 (7.47)

AUDPC, AUDPC/DS, DS/IT

MQTL6A.4

219.29–222.16

wsnp_RFL_Contig3136_3092151/Kukri_c62719_188

2 (2)

8.25 (19.45)

IT/AUDPC, DS/IT

MQTL6B

106.76–106.76

wPt-5176/Xgwm193

24 (20)

9.23 (17.24)

IT/DS (4), AUDPC/IT/SR/LAI, DS (6), IT/AUDPC (3), IT/DS/AUDPC, DS/AUDPC, SR (3), AUDPC (4), IT

MQTL6D

164.26–175.94

D_GDRF1KQ02FFPXT_243/Xpsr8//Kukri_c25717_133

2 (2)

2.43 (13.1)

AUDPC/IT

MQTL7B.1

116.89–119.52

Excalibur_c12500_116/Ra_c39042_935

14 (12)

3.82 (6.86)

LP/IT, DS (5), SR, AUDPC (2), DS/SR, IT (2), FDS

MQTL7B.2

139.91–140.09

IAAV5530/BobWhite_c44404_312

3 (3)

3.34 (9.81)

IT, DS/SR, IT

MQTL7D.1

55.24–56.97

Excalibur_c30913_512/BS00027514_51

6 (5)

11.46 (23.43)

DS (4), DS/IT, DS/AUDPC

MQTL7D.2

67.54–67.87

D_contig66049_34/Kukri_c37802_1215

7 (7)

16.71 (23.43)

AUDPC, SR, AUDPC/IT/SR/LAI, DS (3), AUDPC/IT