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Table 2 Summary of cleaning data in CC, TC, TS, TH and TY libraries

From: Effects of differentially expressed microRNAs induced by rootstocks and silicon on improving chilling tolerance of cucumber seedlings (Cucumis sativus L.)

Type

CC

TC

TS

TH

TY

Total reads

13,472,603

12,525,103

12,975,897

14,870,839

14,685,213

N% > 10%

234

160

159

450

354

Low quality

35,070

27,926

23,355

46,677

48,232

3`adapter null

146,044

139,606

198,688

164,046

204,200

5`adapter contaminants

11,458

12,153

14,893

21,265

19,568

Poly (A/T/G/C)

20,807

29,821

16,130

30,784

35,413

Clean reads

13,258,990

12,315,436

12,722,672

14,607,618

14,377,447

  1. Note: ‘N’ indicates reads for which base information could not be determined
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BMC Genomics

ISSN: 1471-2164

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