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Table 1 Dataset description and details

From: An optimized graph-based structure for single-cell RNA-seq cell-type classification based on non-linear dimension reduction

Dataset

Type

# of cluster

# of cell

# of gene

Seq platform

Klein

Homo sapiens

4

2717

24,021

inDrop

Zeisel

Mus musculus

7

2998

18,869

Illumina HiSeq

Romanov

Mus musculus

7

2863

18,496

Illumina HiSeq

Chung

Homo sapiens

5

515

27,420

Illumina HiSeq

Pbmc

Homo sapiens

8

4220

16,412

10X

Mouse

Mus musculus

16

2044

15,344

Microwell-seq

Biase

Mus musculus

3

49

21,489

Illumina HiSeq

Petropoulos

Homo sapiens

5

1518

21,627

Illumina HiSeq

Neuron

Homo sapiens

11

5483

32,286

cell ranger

Mouse Brain

Mus musculus

5

501

19,465

Space Ranger