Table 2 Data set characteristics and best substitution models
Taxa | Data set | Number of sites | Gaps and missing data (%) | Number of variable sites | Number of informative sites | GC (%) | Best fit model |
|---|---|---|---|---|---|---|---|
47 | LSC | 98,822 | 18.9 | 31,993 | 14,520 | 32.9 | GTR + I + G |
47 | SSC | 22,607 | 24.1 | 11,481 | 7823 | 28.9 | TVM + G |
47 | IRs | 28,585 | 20.0 | 11,465 | 9886 | 42.5 | TVM + G |
47 | 73 protein-coding genes | 58,555 | 25.8 | 10,978 | 5463 | 37.0 | GTR + I + G |
47 | Data-complete | 154,176 | 17.9 | 49,163 | 24,596 | 34.0 | GTR + I + G |
30 | Data-complete in the taxon removal experiments* | 129,134 | 1.7 | 3269 | 500 | 34.1 | TVM + I + G |