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Table 2 High-density (≥ 10 SNP/kb) breed-specific SNP stretch with at least 10 signatures

From: Systematically identifying genetic signatures including novel SNP-clusters, nonsense variants, frame-shift INDELs, and long STR expansions that potentially link to unknown phenotypes existing in dog breeds

Breed

Chromosome

Spanned contiguous genomic region

Fucntional annotation of the enriched region

Type(s) of variants within the block

Number of unique variants within the enriched region

Length of the enriched genomic region (kb)

Average density within the enriched region (variants/kb)

Airedale Terrier

chr17

50532539-50533705

NOTO-RAB11FIP5

intergenic variant

13

1.17

11.15

Akita

chr3

43820580-43822250

LOC119871302-LOC102154570

intergenic variant

17

1.67

10.18

chr6

67004374-67005252

LOC100685738-LOC111096528

intergenic variant

12

0.88

13.67

chr11

73476419-73477544

LOC102152863-LOC119874118

intergenic variant

13

1.13

11.56

chr13

7867964-7869356

ABRA-LOC102153821

intergenic variant

15

1.39

10.78

chr15

60907864-60908601

MARCHF1

intron variant

11

0.74

14.93

chr39

2847054-2848043

LOC119863881

upstream gene variant

10

0.99

10.11

chr39

2851352-2852948

LOC119863881

intron variant missense variant

17

1.60

10.65

Alaskan Malamute

chr2

27213595-27214874

LOC100683304-LOC119870627

intergenic variant

13

1.28

10.16

chr2

27216309-27219197

LOC100683304-LOC119870627

intergenic variant

29

2.89

10.04

chr24

43606138-43607724

LOC119865702-LOC106557684

intergenic variant

16

1.59

10.09

Border Terrier

chr2

61435032-61436207

LOC102154600-IRX5

intergenic variant

12

1.18

10.21

chr11

72265410-72266330

ASTN2-TLR4

intergenic variant

10

0.92

10.87

chr33

11685807-11686737

CBLB

intron variant

10

0.93

10.75

Cairn Terrier

chr20

37745278-37746171

DNAH1

intron variant

11

0.89

12.32

Chow Chow

chr2

66264809-66265603

ZNF423

intron variant

11

0.79

13.85

chr6

73743761-73744749

LOC111096452

upstream gene variant

10

0.99

10.12

chr16

52339968-52341044

LOC119874732-LOC119874733

intergenic variant

11

1.08

10.22

Collie

chr9

27078819-27080678

TMEM92-XYLT2

intergenic variant

21

1.86

11.30

Doberman Pinscher

chr16

32621842-32622762

LOC111090167-LOC111090291

intergenic variant

11

0.92

11.96

Field Spaniel

chr6

58451107-58452596

LOC106558910

intragenic variant

15

1.49

10.07

Irish Wolfhound

chr28

37068313-37069058

LOC119866537

upstream gene variant

10

0.75

13.42

Keeshond

chr18

15227503-15228450

PUS7

intron variant

10

0.95

10.56

Manchester Terrier

chr14

27287580-27288099

SCIN

intron variant

10

0.52

19.27

Miniature Schnauzer

chr3

65005786-65006868

CD38

downstream gene variant

11

1.08

10.17

chr12

52151851-52152658

LOC119881688-LOC111098176

intergenic variant

10

0.81

12.39

Norwich Terrier

chr17

18008212-18009270

LOC119869824-LOC100685329

intergenic variant

11

1.06

10.40

Rhodesian Ridgeback

chr3

86344183-86344850

CCDC149

intron variant

10

0.67

14.99

Rottweiler

chr37

27206943-27207602

LOC119867906-LOC119867974

intergenic variant

11

0.66

16.69

Sussex Spaniel

chr7

63646205-63647049

LOC119876414-LOC119872700

intergenic variant

13

0.84

15.40

chr17

10252987-10255589

LOC610196-LOC106559867

intergenic variant

27

2.60

10.38

chr17

10256599-10257637

LOC610196-LOC106559867

intergenic variant

12

1.04

11.56

chr17

10258238-10259968

LOC610196-LOC106559867

intergenic variant

18

1.73

10.40

chr30

15053870-15055423

LOC111093384-CEP152

intergenic variant

16

1.55

10.30

chr38

3219161-3220318

KCNT2

intron variant

14

1.16

12.10

Tibetan Terrier

chr3

46951394-46952368

LOC608613-LOC119871198

intergenic variant

10

0.97

10.27

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