a | Â | Â | b | Â | Â | Â | Â | |
---|---|---|---|---|---|---|---|---|
Category | Â Â Â Â Â Â Â Â Â Â Â Number of SNPs | Category | Angara | New Zealand | Rex | Total | ||
Total | 24,831,754 | Sample size | n = 6 | n = 6 | n = 6 | n = 18 | ||
Upstream | 156,603 | Number of total SNPs | 15,622,108 | 16,948,460 | 16,539,048 | 24,831,754 | ||
Exonic | Stop gain | 607 | Number of shared SNPs | Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â Â 12,234,559 | ||||
 | Stop loss | 64 |  |  |  |  |  | |
 | Synonymous | 103,686 |  |  |  |  |  | |
 | Nonsynonymous | 57,721 | ‘Upstream’ refers to a variant that overlaps with the 1 kb region upstream of the gene start site ‘Stop gain’ means that a nsSNP leads to the creation of a stop codon at the variant site ‘Stop loss’ means that a nsSNP leads to the elimination of a stop codon at the variant site ‘Splicing’ means that a variant is within 2 bp of a splice junction ‘Downstream’ means that a variant overlaps with the 1 kb region downstream of the gene end site ‘Upstream/Downstream’ means that a variant is located in downstream and upstream regions (possibly for two different genes) | |||||
Intronic | 6,751,084 | |||||||
Splicing | 670 | |||||||
Downstream | 148,646 | |||||||
Upstream/downstream | 1729 | |||||||
Intergenic | 17,610,944 |