Table 5 Annotation of the 18 CpG sites in the prognostic model
No | CpG site | CHR | MAPINFO | Ref gene name | Ref gene group | Relation to CpG Island |
|---|---|---|---|---|---|---|
1 | cg17868751 | X | 3633155 | PRKX | TSS1500 | S_Shore |
2 | cg06577005 | 1 | 26758228 | DHDDS | TSS1500 | N_Shore |
3 | cg17367832 | 2 | 241395288 | MIR149;PP14571;GPC1 | TSS200;Body | Island |
4 | cg23462514 | 4 | 1107585 | RNF212 | TSS200 | Island |
5 | cg25598840 | 7 | 27142618 | HOXA2 | TSS1500 | N_Shore |
6 | cg03021802 | 8 | 21923841 | EPB49 (DMTN) | 5'UTR | Island |
7 | cg14947429 | 10 | 28036151 | MKX | TSS1500 | S_Shore |
8 | cg23067082 | 12 | 7073179 | MIR141 | TSS200 | Â |
9 | cg18210365 | 15 | 65066710 | RBPMS2 | Body | N_Shore |
10 | cg01286935 | 16 | 89778247 | C16orf7 (VPS9D1) | Body | Island |
11 | cg03933495 | 16 | 3493614 | NAT15(NAA60);ZNF597 | TSS200 | S_Shore |
12 | cg00869668 | 17 | 1549012 | SCARF1 | 5’UTR;1stExon | S_Shore |
13 | cg06941557 | 17 | 7757543 | KDM6B;TMEM88 | 3’UTR;TSS1500 | Island |
14 | cg13965612 | 19 | 10928696 | DNM2;MIR199A1 | Body;TSS1500 | – |
15 | cg06303238 | 20 | 50418959 | SALL4 | 1stExon;5’UTR | Island |
16 | cg24332577 | 20 | 50419248 | SALL4 | TSS1500 | S_Shore |
17 | cg26728517 | 20 | 39319540 | – | – | Island |
18 | cg21655830 | 21 | 44899410 | C21orf84 (LINC00313) | TSS1500 | – |