Table 2 Characteristics of the chloroplast genomes of 23 Cuscuta species and the outgroup
Species | Genbank accession No. | Total length(bp) | LSC length | SSC length | IR length | genes | tRNA | rRNA | CDS | CG% | reference |
|---|---|---|---|---|---|---|---|---|---|---|---|
C. exaltata | EU189132 | 125,373 | 83,320 | 8571 | 33,482 | 124 | 42 | 8 | 69 | 38.1 | McNeal et al. (2007) |
C. reflexa | AM711640 | 121,521 | 79,468 | 8571 | 33,482 | 112 | 35 | 8 | 68 | 38.2 | Funk et al. (2007) |
C. japonica | MH780080 | 121,037 | 79,517 | 8412 | 33,108 | 107 | 32 | 8 | 67 | 38.3 | Unpublished |
C. japonica | OL752640 | 121,031 | 79,505 | 8388 | 33,138 | 107 | 32 | 8 | 67 | 38.3 | this study |
C. nitida | NC052869 | 113,762 | 69,480 | 8012 | 36,270 | 106 | 30 | 8 | 68 | 37.5 | Banerjee and Stefanović (2020) |
C.africana | NC052870 | 105,066 | 60,830 | 7580 | 36,656 | 104 | 30 | 8 | 62 | 37.5 | Banerjee and Stefanović (2020) |
C. approximata | NC052871 | 98,380 | 91,011 | 7369 | N/A | 96 | 27 | 4 | 64 | 35.0 | Banerjee and Stefanović (2020) |
C. pedicellata | MN464181 | 97,091 | 89,375 | 7716 | N/A | 96 | 27 | 4 | 64 | 35.4 | Banerjee and Stefanović (2020) |
C. epithymum | OP620588 | 96,292 | 69,214 | 2908 | 24,170 | 97 | 27 | 4 | 66 | 35.1 | This study |
C. europaea | OP620589 | 97,661 | 77,514 | 1624 | 18,523 | 91 | 27 | 4 | 60 | 35.2 | This study |
C. chinensis | MH780079 | 86,927 | 50,572 | 7121 | 29,234 | 96 | 26 | 8 | 62 | 37.6 | Unpublished |
C. chinensis | OL752638 | 86,910 | 50,547 | 7129 | 29,234 | 98 | 28 | 8 | 62 | 37.6 | this study |
C. gronovii | AM711639 | 86,744 | 50,973 | 7063 | 28,708 | 98 | 28 | 8 | 61 | 37.7 | Funk et al. (2007) |
C. gronovii | OL752639 | 86,745 | 50,974 | 7063 | 28,708 | 98 | 28 | 8 | 61 | 37.7 | this study |
C. campestris | NC052920 | 86,727 | 50,956 | 7063 | 28,708 | 96 | 28 | 8 | 60 | 37.7 | Unpublished |
C. costaricensis | MK881072 | 86,691 | 50,149 | 7354 | 29,188 | 96 | 28 | 8 | 60 | 37.1 | Banerjee and Stefanović (2019) |
C. pentagona | MH121054 | 86,380 | 50,958 | 7022 | 28,400 | 97 | 28 | 8 | 61 | 37.9 | Park et al. (2018) |
C. obtusiflora | EU189133 | 85,286 | 50,207 | 6817 | 28,262 | 98 | 29 | 8 | 61 | 37.8 | McNeal et al. (2007) |
C. australis | NC045885 | 85,263 | 50,384 | 6727 | 28,152 | 97 | 28 | 8 | 61 | 37.8 | Wang et al. (2020) |
C. chapalana | MK887214 | 84,607 | 50,250 | 8223 | 26,134 | 96 | 27 | 8 | 61 | 37.6 | Banerjee and Stefanović (2019) |
C. mexicana | MK887213 | 83,526 | 50,154 | 6894 | 26,478 | 92 | 25 | 8 | 57 | 37.5 | Banerjee and Stefanović (2019) |
C. bonafortunae | MK887215 | 82,346 | 49,128 | 7920 | 25,298 | 95 | 27 | 8 | 59 | 37.3 | Banerjee and Stefanović (2019) |
C. carnosa | MK887212 | 81,577 | 48,410 | 8729 | 24,438 | 91 | 23 | 8 | 58 | 37.8 | Banerjee and Stefanović (2019) |
C. strobilacea | MK867795 | 63,787 | 30,720 | 6863 | 26,204 | 74 | 27 | 8 | 33 | 37.1 | Banerjee and Stefanović (2019) |
C. boldinghii | MK881074 | 62,375 | 30,090 | 6701 | 25,584 | 70 | 27 | 8 | 31 | 36.8 | Banerjee and Stefanović (2019) |
C. erosa | MK881073 | 60,959 | 29,596 | 6275 | 25,088 | 71 | 27 | 8 | 33 | 36.9 | Banerjee and Stefanović (2019) |
I. purpurea | EU118126 | 162,046 | 88,172 | 12,110 | 61,764 | 140 | 45 | 8 | 87 | 37.5 | McNeal et al. (2007) |