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Table 12 Description of the periclinal chimeras on Merlot-Hap-MG located in a gene region

From: Chimeras in Merlot grapevine revealed by phased assembly

Chr

Position on Merlot Root Hap MG

Cell layer

Coding region

Gene orientation

REF Codon

REF Amino Acid

ALT Codon

ALT Amino Acid

Gene name

LOC

NAME

 

chr 03

3,419,274

L1

CDS

reverse

ATC

I

TTC

F

Vitvi03g01484.CDS2

LOC100243450

isoflavone reductase-like protein

 

chr 03

17,695,770

L2

gene

     

Vitvi03g01777

   

chr 04

27,055,780

L1

gene

     

Vitvi04g01695.t01

LOC100259141

GDP-mannose transporter GONST1

 

chr 05

5,349,008

L2

gene

     

Vitvi05g00464

LOC100261408

chloride channel ClC6

 

chr 05

8,794,703

L1

gene

     

Vitvi05g00751.t01

   

chr 05

8,797,586

L1

gene

     

Vitvi05g00751.t01

   

chr 05

12,819,049

L1

gene

     

Vitvi05g00975.t01

LOC100242520

dihydroxy-acid dehydratase, chloroplastic

 

chr 05

18 874 107

L1

gene

     

Vitvi05g01197.t01

   

chr 08

5,971,148

L2

gene

     

Vitvi08g00297

LOC100245232

uncharacterized

 

chr 08

13,911,900

L1

CDS

reverse

CGG

R

CTG

L

Vitvi08g00910.CDS1

LOC100249911

uncharacterized LOC100249911

 

chr 10

2,278,377

L1

gene

     

Vitvi00g01047.t01

LOC100853350

sister chromatid cohesion protein PDS5 homolog B

 

chr 10

5,337,832

L1

CDS

forward

AGA

R

AGG

R

Vitvi10g00473.CDS1

LOC100258824

putative nuclear RNA export factor SDE5

 

chr 10

10,968,103

L1

gene

     

Vitvi10g00847.r01

LOC104880520

uncharacterized LOC104880520

 

chr 10

22,333,673

L1

gene

     

Vitvi10g01425.t01

   

chr 11

13,732,865

L1

CDS

forward

AGT

S

AGC

S

Vitvi11g00979.CDS8

LOC100246466

DEAD-box ATP-dependent RNA helicase 10

 

chr 11

13,734,413

L1

gene

     

Vitvi11g00979.t01

LOC100246466

DEAD-box ATP-dependent RNA helicase 10

 

chr 12

7,859,048

L2

gene

     

Vitvi12g00621

LOC100263032

5' exonuclease Apollo

 

chr 13

18,415,015

L1

gene

     

Vitvi13g01203.r01

LOC104881233

uncharacterized LOC104881233

 

chr 13

24,830,909

L1

gene

     

Vitvi13g02403.t01

LOC100261918

annexin D4-like

 

chr 13

25,521,690

L2

gene

     

Vitvi13g02429

LOC100244776

uncharacterized

 

chr 15

20,391,775

L2

CDS

forward

TCA

S

GCA

A

Vitvi15g00944.exon15

LOC100255258

uncharacterized

 

chr 17

7,800,769

L1

CDS

forward

TGC

C

TAC

Y

Vitvi17g00653.CDS1

   

chr 17

20,480,355

L1

CDS

reverse

GTA

V

ATA

I

Vitvi17g01265.CDS1

   
  1. All chimeras included in a gene are shown in this table. Their exact location on Merlot-Root-Hap-MG and the cell layer are given. If the chimera is located in a coding region it is marked “CDS” otherwise it is “gene”. When the position is in a coding region, the gene orientation either reversed or forward is given with the reference codon and amino acid, the nucleotide carrying the mutation is written in bold. The alternative sections show the impact of the mutation on the codon and the amino acid. Three last columns allow gene identification through gene name, LOC code and name
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BMC Genomics

ISSN: 1471-2164

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