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Table 5 Search for genome completion using BUSCO embryophyta odb 10

From: Chimeras in Merlot grapevine revealed by phased assembly

 

Merlot Hap CF

Merlot Hap MG

Leaf

Root

Leaf

Root

Raw

Pseudo

Raw

Pseudo

Raw

Pseudo

Raw

Pseudo

Complete

98.7%

98.7%

98.6%

98.5%

98.2%

98.2%

98.2%

98.2%

Complete and single copy

93.2%

96.5%

94.2%

97.1%

96.0%

97.0%

95.1%

97.0%

Complete and duplicated

5.5%

2.2%

4.4%

1.4%

2.2%

1.2%

3.1%

1.2%

Fragmented

0.8%

0.9%

1.0%

0.9%

1.2%

1.2%

1.2%

1.2%

Missing

0.5%

0.4%

0.4%

0.6%

0.6%

0.6%

0.6%

0.6%

Total groups searched

1614

  1. BUSCO was first performed on raw reads of each haplotype, just after trio-binning (Raw), second BUSCO was done on the pseudomolecules (Pseudo). Complete means that the gene is entirely found, whereas fragmented is not. Single copy means the gene is only found once whereas duplicated means it is found several times. Missing is the percentage of genes expected but not found on the genome. Total groups searched is the number of genes expected