Table 6 Variant calling statistics when reads were aligned on Merlot-root-hap-CF pseudomolecule
From: Chimeras in Merlot grapevine revealed by phased assembly
Reads aligned on Merlot-root-Hap-CF | Filtered variant sites | % of SNV in filtered variants | % of filtered variants included in repeated Sequences | % of variant sites included in genes | % of variant sites included in coding region |
|---|---|---|---|---|---|
Merlot root hap CF (himself) | 3 207 | 71% | 63% | 28% | 6% |
Merlot leaf hap CF | 3 731 | 67% | 67% | 24% | 5% |
Merlot leaf hap MG | 3 561 942 | 89% | 60% | 29% | 4% |
Merlot root hap MG | 3 490 079 | 89% | 60% | 29% | 4% |
Cabernet Franc (paternal) | 2 730 140 | 86% | 52% | 36% | 5% |
Magdeleine N. C. (maternal) | 4 987 693 | 89% | 57% | 31% | 5% |