Fig. 4

A genome wide species level phylogeny with clade specific orthologs. Whole genome comparative analysis computed with Orthofinder. Publicly available whitefly species were B. argentifolii, B. tabaci s.s. and T. vaporariorum (“Greenhouse whitefly”). Phylogenetic relationships estimated with RAxML (maximum likelihood) and MrBayes (Bayesian posterior probability) on a concatenated matrix of protein sequences of 23 species covering 655 OGCs (131,953 amino acids). a Species-level phylogeny with associated node support values (*/*) ⟹ Bayesian PP / BS (bootstrap replicates n = 100); under the best-fitting substitution model LG + G + F + I. b Ortholog set delineation depicted with respect to major Arthropoda clades (Pancrustacea, Hexapoda, Hemiptera and Aleyrodidae); ‘Multi-copy N:N:N’ ortholog sets contain ≥ 1 gene across all species; ‘Patchy’: missing a single species representative. The six new B. tabaci s.l. populations are highlighted in green dashed boxes. c OGC clade sets with relatively low gene counts expanded for clarity