Table 2 Genome assembly statistics and comparison
Common name | Species/population | INSDC Accession | Assembly size (bp) | Assembly size (Mb) | Length in gap-free scaffolds (bp) | Length in gap-free scaffolds (%) | No. Scaffolds | Contig N50 (bp) | Scaffold N50 (bp) | Scaffold N50 (Mb) | L50 scaffold count | Max scaffold length (bp) | Min scaffold length (bp) | GC % |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
African cassava whitefly | B. tabaci SSA1-SG1-Ug | GCA_902825415.1 | 657,779,510 | 657.78 | 654,458,526 | 99.50 | 955 | 1,064,702 | 2,827,586 | 2.83 | 52 | 22,889,223 | 9,897 | 39.39 |
African cassava whitefly | B. tabaci SSA1-SG1-Ng | GCA_902825425.1 | 656,260,349 | 656.26 | 656,260,349 | 100.00 | 4,493 | 458,228 | 458,228 | 0.46 | 294 | 9,533,218 | 225 | 39.59 |
African cassava whitefly | B. tabaci SSA2-Ng | GCA_903994125.1 | 625,325,389 | 625.32 | 625,325,389 | 100.00 | 785 | 7,807,116 | 7,807,116 | 7.81 | 23 | 42,504,780 | 1,535 | 39.62 |
African cassava whitefly | B. tabaci SSA3-Ng | GCA_903994115.1 | 648,308,134 | 648.31 | 648,308,134 | 100.00 | 2,278 | 2,199,268 | 2,199,268 | 2.20 | 56 | 23,475,035 | 1,709 | 39.60 |
Indian cassava whitefly | B. tabaci Asia II-5 | GCA_903994105.1 | 616,120,436 | 616.12 | 616,120,436 | 100.00 | 227 | 10,839,054 | 10,839,054 | 10.84 | 14 | 53,342,825 | 554 | 39.63 |
Sweet-potato whitefly | B. tabaci Uganda-1 | GCA_903994095.1 | 630,407,635 | 630.41 | 612,247,491 | 97.11 | 5,713 | 91,652 | 177,279 | 0.18 | 1,121 | 1,182,621 | 2,406 | 38.36 |
Silverleaf whitefly | B. argentifolii | GCA_001854935.1 | 615,001,830 | 615.00 | 600,627,672 | 97.66 | 19,750 | 102,104 | 3,232,964 | 3.23 | 56 | 11,178,615 | 254 | 38.72 |
Tobacco whitefly | B. tabaci sensu stricto | GCA_003994315.1 | 658,280,412 | 658.28 | 635,234,674 | 96.50 | 4,975 | 54,255 | 436,791 | 0.44 | 421 | 2,857,362 | 221 | 38.27 |
Greenhouse whitefly | T. vaporariorum | GCA_011764245.1 | 787,368,623 | 787.36 | 785,766,123 | 99.79 | 397 | 500,116 | 69,978,400 | 69.97 | 5 | 97,306,886 | 1,000 | 38.91 |
Pea aphid | A. pisum | GCA_000142985.2 | 541,675,471 | 541.68 | 499,891,253 | 92.29 | 23,924 | 28,201 | 518,546 | 0.52 | 280 | 3,073,041 | 200 | 27.46 |
Anopheles mosquito | A. gambiae | GCA_000005575.1 | 283,349,351 | 283.35 | 260,133,033 | 91.81 | 831 | 169,164 | 49,364,325 | 49.36 | 3 | 61,545,105 | 885 | 40.67 |
Fruit fly | D. melanogaster | GCA_000001215.4 | 143,726,002 | 143.73 | 142,573,910 | 99.20 | 1,870 | 21,485,538 | 25,286,936 | 25.29 | 3 | 32,079,331 | 544 | 41.67 |
Flower beetle | T. castaneum | GCA_000002335.3 | 165,928,604 | 165.93 | 152,415,650 | 91.86 | 2,081 | 86,006 | 15,265,516 | 15.27 | 5 | 31,381,287 | 248 | 31.10 |