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Table 5 Bemisia tabaci s.l. transposable element summary statistics

From: Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors

B. tabaci s.l. genome

TE Statistic

Transposable element class

Genomic GC

Total Repeat GC

GC diff

Genome masked

SINE

LINE

LTR

DNA

Rolling-circles

Small RNA

Satellite

Simple repeat

Low complexity

Unclassified

Combined Total

B. tabaci SSA1-SG1-Ug (657.7 Mb)

Copy count

8,221

23,676

22,606

122,504

7,048

2,034

1,873

114,820

23,003

1,032,414

1,358,199

-

-

-

-

Span (bp)

1,504,504

7,586,278

4,065,482

26,608,725

1,075,915

183,698

473,301

6,220,683

1,351,002

199,426,376

248,495,964

-

-

-

-

Coverage (%)

0.23

1.15

0.62

4.05

0.16

0.03

0.07

0.95

0.21

30.32

37.78

39.6

40.44

0.84

37.78

B. tabaci SSA1-SG1-Ng

(656.2 Mb)

Copy count

11,805

22,927

7,821

104,781

5,919

302

1,652

110,078

22,867

1,100,798

1,388,950

-

-

-

-

Span (bp)

3,003,411

7,895,164

2,209,704

21,839,192

1,104,760

143,941

439,305

5,360,484

1,321,503

213,765,783

257,083,247

-

-

-

-

Coverage (%)

0.46

1.20

0.34

3.33

0.17

0.02

0.07

0.82

0.20

32.57

39.17

39.59

40.67

1.08

39.17

B. tabaci SSA2-Ng (625.3 Mb)

Copy count

10,786

36,764

12,933

117,049

1,3847

2,060

2,247

100,112

20,789

1,093,821

1,410,408

-

-

-

-

Span (bp)

2,396,458

8,850,008

3,715,322

29,063,758

2,942,314

300,128

577,628

5,053,855

1,212,022

238,132,975

292,244,468

-

-

-

-

Coverage (%)

0.38

1.42

0.59

4.65

0.47

0.05

0.09

0.81

0.19

38.08

46.74

39.63

41.31

1.68

46.74

B. tabaci SSA3-Ng (648.3 Mb)

Copy count

12,665

40,819

33,578

109,579

7,615

2,691

1,983

103,648

21,228

1,116,514

1,450,320

-

-

-

-

Span (bp)

2,660,271

11,352,651

5,024,618

25,645,693

1,643,239

683,945

517,288

5,783,986

1,252,960

245,293,574

299,858,225

-

-

-

-

Coverage (%)

0.41

1.75

0.78

3.96

0.25

0.11

0.08

0.89

0.19

37.84

46.25

39.61

41.09

1.48

46.25

B. tabaci Asia II-5 (616.1 Mb)

Copy count

4,312

20,780

16,212

105,077

10,283

822

1,980

107,152

22,167

1,004,819

129,3604

-

-

-

-

Span (bp)

881,080

5,852,771

3,803,415

23,317,570

1,984,802

225,648

863,091

5,574,468

1,248,592

192,014,952

235,766,389

-

-

-

-

Coverage (%)

0.14

0.95

0.62

3.79

0.32

0.04

0.14

0.91

0.20

31.17

38.27

39.63

40.77

1.14

38.27

B. tabaci Uganda-1 (630.4 Mb)

Copy count

6,901

21,781

10,742

140,247

7,603

1,674

438

111,149

21,539

98,8850

1,310,924

-

-

-

-

Span (bp)

1,643,597

8,573,982

4,231,613

33,332,306

2,414,279

661,559

199,819

6,088,730

1,242,222

218,378,685

276,766,792

-

-

-

-

Coverage (%)

0.26

1.36

0.67

5.29

0.38

0.10

0.03

0.97

0.20

34.64

43.90

39.5

41.27

1.77

43.90

  1. Transposable element (TE) summary for the new B. tabaci s.l. genomes. TEs are summarized by their class
  2. Columns left to right represent: complete TE copies (n); length span (bp) and total genomic coverage (%)
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BMC Genomics

ISSN: 1471-2164

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