Table 1 Assembly and annotation statistics for Meraculous and Hi-C scaffolded assemblies for M. hyperodae and M. aethiopoides strains. Genome and Annotation BUSCO completeness (%) scores refer to the number of BUSCO genes found complete (whether single-copy or duplicated) in the genome assemblies and respective annotations
Assembly statistics | Hi-C assemblies | Meraculous assemblies | ||||
|---|---|---|---|---|---|---|
M. hyperodae | M. aethiopoides Irish | M. hyperodae | M. aethiopoides Irish | M. aethiopoides French | M. aethiopoides Moroccan | |
Total length (Mb) | 106.7 | 129.2 | 105.8 | 128.8 | 118.9 | 120.3 |
Number of scaffolds | 3663 | 2844 | 14,207 | 6322 | 10,395 | 13,735 |
Scaffold N50 (bp) | 9,364,176 | 23,025,277 | 15,392 | 64,081 | 30,183 | 17,930 |
L50 | 5 | 3 | 1758 | 484 | 881 | 1634 |
GC (%) | 29.5 | 29.4 | 29.5 | 29.4 | 29.3 | 29.4 |
Genome BUSCO complete (%) | 89.8 | 93.9 | 86.8 | 93.2 | 90.7 | 89.1 |
Predicted genes | 11,744 | 12,474 | 13,667 | 13,521 | 14,229 | 14,475 |
Annotation BUSCO complete (%) | 87.9 | 94.0 | 85.2 | 90.7 | 88.4 | 85.8 |
Repeat content (%) | 12.85 | 21.67 | 12.76 | 22.08 | 17.63 | 17.96 |