Fig. 5

Comparison of gene expression between sequential regeneration stages A) UpSetR plot showing the number of DEGs (differentially expressed genes) that are shared between comparisons (e.g. 2370 genes are identified as DEGs between 0 dpa and 1 dpa). Only sequential comparisons were considered (0dpa vs. 1dpa; 1dpa vs. 2dpa and so on). Orange bars represent DEGs unique to one comparison, black bars represent DEGs identified in more than one comparison. B Treeplot representation of clustered GO term enrichment analysis (Biological Processes category) for two major sequential comparisons, namely 1 dpa vs 1 dpa, and 3 dpa vs. 5 dpa. Circles area are proportional to the number of genes in each annotation, the colors represent the p-value of the over-representation