Table 3 Genome-wide significant SNPs associated with eggshell speckles
From: Genome-wide association study exploring the genetic architecture of eggshell speckles in laying hens
SNP ID | CHR | Position (bp) | Effect allele | Other allele | Allele frequency | Beta | Se | P value | PVE (%) | Annotation | Gene Name |
|---|---|---|---|---|---|---|---|---|---|---|---|
chr5: 25,569,162: T > G | 5 | 25,569,162 | G | T | 0.42 | -0.31 | 0.06 | 2.14 × 10− 7 | 4.27 | Intron variant | LOC423226 |
chr5: 25,487,937: C > A | 5 | 25,487,937 | A | C | 0.43 | -0.31 | 0.06 | 2.56 × 10− 7 | 3.51 | Intron variant | SPTBN5 |
chr5: 25,535,784: A > G | 5 | 25,535,784 | A | G | 0.43 | -0.29 | 0.05 | 3.83 × 10− 7 | 7.80 | Intron variant | EHD4 |
chr5: 25,639,434: T > C | 5 | 25,639,434 | C | T | 0.45 | -0.31 | 0.06 | 3.99 × 10− 7 | 2.66 | Intron variant | LOC771552 |
chr5: 25,566,605: T > C | 5 | 25,566,605 | C | T | 0.42 | -0.30 | 0.06 | 4.45 × 10− 7 | 2.54 | Intron variant | LOC423226 |
chr5: 25,632,746: A > G | 5 | 25,632,746 | A | G | 0.42 | -0.31 | 0.06 | 5.22 × 10− 7 | 2.16 | Intron variant | LOC771552 |