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Table 4 Percent of tags that are assigned at different taxonomic levels for the different tag sets

From: Large-scale analysis of sheep rumen metagenome profiles captured by reduced representation sequencing reveals individual profiles are influenced by the environment and genetics of the host

Tag Seta

Number of Tags

Kingdom

Phylum

Class

Order

Family

Genus

Species

GLS

246,833

40.9%

37.7%

37.0%

36.7%

35.1%

34.1%

22.9%

GAS

264,319

41.4%

38.2%

37.5%

37.3%

35.8%

34.8%

22.5%

GLL

231,903

42.5%

39.3%

38.6%

38.4%

37.0%

36.1%

22.9%

GAL

215,178

43.3%

40.4%

39.7%

39.5%

38.0%

37.2%

22.7%

LLS

206,473

38.6%

35.7%

34.9%

34.7%

33.1%

32.3%

20.7%

LLL

227,719

37.7%

35.1%

34.4%

34.1%

32.6%

31.8%

20.9%

MAS

135,153

40.2%

37.0%

36.3%

36.0%

34.6%

33.8%

21.7%

AUS

150,687

41.5%

38.1%

37.4%

37.2%

35.9%

35.1%

20.7%

All

186,302

42.0%

38.7%

38.0%

37.8%

36.3%

35.5%

22.4%

NZ

203,396

41.4%

38.3%

37.5%

37.3%

35.8%

35.0%

22.4%

All Groups

21,119

47.7%

44.7%

44.0%

43.9%

42.4%

41.8%

21.7%

All Tags

571,479

38.8%

36.0%

35.2%

34.9%

33.5%

32.6%

21.7%

  1. All Tags is the set of tags that are present in the tag sets for at least one of the eight Groups
  2. aTags present in 25% of samples in the GLS, GAS, GLL, GAL, LLS, LLL, MAS and AUS Groups; all samples (All) or New Zealand samples (NZ). All Groups is the set of tags that are present in the tag sets of all the eight Groups