Table 1 General information of sequencing reads and reads that mapped to the reference genome
Sample | Clean Read | Clean Base (G) | GC content (%) | Q20 (%) | Q30 (%) | Mapped reads |
|---|---|---|---|---|---|---|
S0-1 | 45,238,630 | 6.75 | 42.91 | 97.99 | 94.14 | 42,533,284 (94.02%) |
S0-2 | 43,915,334 | 6.55 | 42.93 | 98.12 | 94.50 | 41,338,562 (94.13%) |
S0-3 | 41,189,220 | 6.15 | 42.87 | 97.91 | 93.97 | 38,679,114 (93.91%) |
S1-1 | 41,592,546 | 6.20 | 43.04 | 97.99 | 94.16 | 38,598,001 (92.80%) |
S1-2 | 41,453,026 | 6.18 | 42.96 | 97.93 | 93.98 | 38,548,999 (92.99%) |
S1-3 | 47,701,382 | 7.12 | 43.03 | 98.04 | 94.28 | 44,212,033 (92.69%) |
S2-1 | 44,443,902 | 6.64 | 43.42 | 98.09 | 94.37 | 39,637,240 (89.18%) |
S2-2 | 44,636,102 | 6.66 | 43.39 | 98.06 | 94.27 | 39,908,893 (89.41%) |
S2-3 | 45,383,130 | 6.77 | 43.53 | 98.06 | 94.30 | 40,512,719 (89.27%) |
R0-1 | 48,827,806 | 7.27 | 43.15 | 98.05 | 94.34 | 45,816,990 (93.83%) |
R0-2 | 38,843,400 | 5.80 | 43.04 | 97.95 | 94.18 | 36,478,638 (93.91%) |
R0-3 | 50,413,708 | 7.53 | 43.07 | 98.07 | 94.45 | 47,289,383 (93.80%) |
R1-1 | 39,227,692 | 5.85 | 42.89 | 98.07 | 94.44 | 36,438,894 (92.89%) |
R1-2 | 42,358,224 | 6.32 | 43.56 | 97.95 | 94.16 | 37,566,792 (88.69%) |
R1-3 | 48,981,512 | 7.32 | 42.86 | 97.98 | 94.17 | 45,834,779 (93.58%) |
R2-1 | 40,608,484 | 6.06 | 42.86 | 97.94 | 94.04 | 38,083,232 (93.78%) |
R2-2 | 44,990,206 | 6.71 | 42.88 | 98.00 | 94.10 | 42,170,748 (93.73%) |
R2-3 | 41,544,724 | 6.20 | 42.85 | 98.05 | 94.27 | 38,930,876 (93.71%) |