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Table 1 Summary of overlapping and unique hits of CNVs within and across breeds at twin coverages

From: Read-depth based approach on whole genome resequencing data reveals important insights into the copy number variation (CNV) map of major global buffalo breeds

Breeds

Banni

Bhadawari

Pandharpuri

Murrah

Surti

Jaffarabadi

Banni

25,562

(197)

10,850

(218)

9359

(229)

11,194

(181)

8790

(201)

10,759

(190)

Bhadawari

68,628

(4784)

29,981

(54)

10,673

(237)

12,649

(153)

9504

(227)

11,931

(214)

Pandharpuri

68,410

(5131)

80,000

(2901)

43,788

(38)

11,045

(142)

8242

(181)

10,503

(146)

Murrah

62,108

(4923)

65,799

(3508)

65,412

(8260)

23,800

(335)

9924

(214)

12,361

(181)

Surti

60,696

(5481)

64,399

(3925)

63,822

(8942)

58,103

(3153)

19,964

(217)

9432

(179)

Jaffarabadi

73,238

(3388)

78,012

(2402)

90,399

(3495)

67,950

(2421)

67,009

(1887)

36,096

(44)

  1. Diagonal elements refer to overlap between 10X and 30X of the same breed. The upper triangle represents the overlap between two breeds at 10X coverage. The lower triangle indicates overlap between two breeds at 30X coverage. The italicized values in parenthesis represent the unique hits with no overlap across specific comparisons.Â