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Table 4 Distribution and relation of CNVRs with gene density in six buffalo breeds at two different densities across autosomes

From: Read-depth based approach on whole genome resequencing data reveals important insights into the copy number variation (CNV) map of major global buffalo breeds

Chr

Size (Mb)

Gene count

Gene density (genes /Mb)

CNVR count (10X)

CNVR count (30X)

BAN

PAN

SUR

JFR

MUR

BDW

BAN

PAN

SUR

JFR

MUR

BDW

1

202.35

1986

09.81

33

35

33

34

37

33

754

550

529

653

585

590

2

188.16

2760

14.67

35

36

38

40

41

39

631

628

484

632

563

532

3

174.87

3089

17.66

37

38

39

35

34

39

525

488

388

476

413

407

4

164.97

2505

15.18

48

44

37

51

49

39

631

527

446

598

506

499

5

132.50

2083

15.72

42

39

44

40

44

45

580

541

438

516

465

467

6

120.42

2126

17.65

29

21

24

20

22

25

414

333

311

370

331

301

7

117.00

1043

08.91

20

21

16

17

19

17

370

359

279

349

318

313

8

119.32

1351

11.32

23

29

25

22

25

23

417

333

309

381

338

357

9

110.26

2008

18.21

25

21

30

29

22

30

430

400

319

411

372

387

10

104.55

938

08.97

12

12

18

16

16

15

391

316

281

337

321

310

11

102.42

1697

16.57

27

34

27

25

34

34

370

319

275

350

323

310

12

106.39

1523

14.32

12

8

17

9

13

10

281

290

223

270

249

226

13

89.36

695

07.78

85

63

75

83

69

77

812

739

717

773

745

732

14

83.48

1293

15.49

11

9

5

10

10

12

246

226

195

230

186

189

15

81.83

856

10.46

11

5

9

7

7

10

216

208

165

224

204

195

16

85.12

1702

20.00

35

35

40

51

44

34

500

410

385

449

414

386

17

72.60

994

13.69

11

11

12

14

15

11

264

242

201

228

213

208

18

65.79

1874

28.48

28

28

27

33

29

34

339

315

253

319

273

275

19

71.58

591

08.26

8

10

9

9

7

10

257

218

204

228

229

202

20

69.61

1019

14.64

29

29

30

26

28

29

310

324

255

284

270

247

21

60.62

852

14.05

9

7

6

10

9

9

150

163

109

123

112

110

22

61.77

600

09.71

4

7

7

5

7

5

207

173

147

200

172

162

23

52.10

712

13.67

18

14

17

13

14

16

191

188

155

176

160

168

24

42.17

1048

24.85

6

3

2

1

6

4

116

170

82

107

98

94

  1. Chr: Chromosome; Mb: Mega base; BAN: Banni; PAN: Pandharpuri; SUR: Surti; JFR: Jaffarabadi; MUR: Murrah; BDW: Bhadawari