Table 1 Different reads were screened by BLASR and assembled with different parameters of Flye
BLASR parameter* | Total length of reads (bp) | Flye parameter* | Genome size after assembly (bp) | Number of Fragments |
|---|---|---|---|---|
Identity ≥ 60%, maxscore≤-250 | 1,024,923,876 | minimum overlap between reads ≥ 1000 bp | 53,393,107 | 1561 |
minimum overlap between reads ≥ 3000 bp | 53,568,170 | 1501 | ||
minimum overlap between reads ≥ 5000 bp | 53,930,492 | 1476 | ||
Identity ≥ 60%, maxscore≤-300 | 639,517,259 | minimum overlap between reads ≥ 1000 bp | 1,734,532 | 70 |
minimum overlap between reads ≥ 3000 bp | 2,258,584 | 55 | ||
minimum overlap between reads ≥ 5000 bp | 2,352,926 | 50 |