Table 1 Selected bacterial strains and their Illumina assembly statistics
From: A comparison of Oxford nanopore library strategies for bacterial genomics
Species (MASAE accession) | Gram | Phylum, Order, Family | Contigs | GC | N50 (bp) | Mbp |
|---|---|---|---|---|---|---|
Serratia proteamaculans (CD3406) | - | Pseudomonadota;Enterobacterales;Yersiniaceae | 96 | 54.8% | 163,495 | 5.87 |
Serratia proteamaculans (EBP3064) | - | Pseudomonadota;Enterobacterales;Yersiniaceae | 60 | 55.2% | 273,789 | 5.46 |
Serratia fonticola (MIP2602) | - | Pseudomonadota;Enterobacterales;Yersiniaceae | 124 | 53.6% | 139,619 | 6.21 |
Morganella morganii (HIS2824) | - | Pseudomonadota;Enterobacterales;Morganellaceae | 43 | 50.3% | 257,021 | 4.14 |
Hafnia paralvei (MIP2461) | - | Pseudomonadota;Enterobacterales;Hafniaceae | 68 | 48.0% | 347,145 | 4.89 |
Photobacterium phosphoreum (MIP2473) | - | Pseudomonadota;Vibrionales;Vibrionaceae | 73 | 39.5% | 144,700 | 4.48 |
Shewanella baltica (SF1039) | - | Pseudomonadota;Alteromonadales;Shewanellaceae | 88 | 46.3% | 150,379 | 5.05 |
Pseudomonas fluorescens (SF1671) | - | Pseudomonadota;Pseudomonadales;Pseudomonadaceae | 187 | 60.1% | 82,654 | 7.58 |
Weeksellaceae sp. (MIP2422) | - | Bacteriodata;Flavobacteriales;Weeksellaceae | 42 | 36.6% | 158,725 | 3.27 |
Bacillus velezensis (SAF3325) | + | Bacillota;Bacillales;Bacillaceae | 36 | 45.9% | 326,966 | 4.14 |
Lactococcus piscium (SAF3333) | + | Bacillota;Lactobacillales;Streptococcaceae | 68 | 38.5% | 132,316 | 2.25 |
Carnobacterium maltaromaticum (SF2022) | + | Bacillota;Lactobacillales;Carnobacteriaceae | 26 | 34.3% | 591,805 | 3.46 |