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Table 6 Classified reads content

From: A comparison of Oxford nanopore library strategies for bacterial genomics

 

Mapped

 

Unmapped

All

Correct

Leaked

PCR

1.13 M

0.07 M

4.27 M

5.47 M

3.16 Gbp

0.26 Gbp

1.48 Gbp

4.91 Gbp

TAG

1.61 M

0.02 M

0.07 M

1.70 M

9.98 Gbp

0.07 Gbp

0.02 Gbp

10.07 Gbp

  1. Content of reads classified by Guppy (i.e. reads with a barcode) in millions of reads (M) and cumulative length in Giga base pair (Gbp). Classified reads were sorted via mapping to the curated genomes to determine reads that were correctly assigned (the read barcode is in agreement with the genome it mapped to), those representing barcode leakage (the read barcode is not in agreement with the genome it mapped to) or those unmapped (reads with very low quality or artifactual). See Addtional file 4 for further details on barcoding statistics