Table 1 General characteristics of MTC0619 and MTC1106 genomes
Feature | MTC0619 (ST25) | MTC1106 (ST2) |
|---|---|---|
ST (Pasteur) | 25 | 2 |
ST (Oxford) | 229 | 195/1816 |
KL type | KL14 | KL3 |
OCL type | OCL6 | OCL1 |
Predicted CDS | ||
 – Prokka | 3,918 | 3,674 |
 – RASTtk | 4,018 | 3,842 |
tRNAs | 64 | 63 |
rRNAs | 5 | 4 |
Hypothetical proteins | ||
 – Prokka | 1,701 | 1,571 |
 – RASTtk | 1,167 | 912 |
Genes assigned to COG | 3,244 | 3,080 |
Genes assigned to KEGG orthology | 2,095 | 2,005 |
Predicted IS elements | ||
 – MobileElementFinder | 6 | 3 |
 – ISEScan | 20 | 12 |
Predicted virulence genes (VFDB) | 75 | 78 |
Predicted resistance genes | ||
 – NCBI AMRFinder | 10 | 12 |
 – ResFinder | 9 | 11 |
 – MEGARes | 30 | 33 |
 – CARD | 26 | 29 |
Predicted prophage region (PHASTER) | ||
 – Intact | 2 | 0 |
 – Questionable | 1 | 0 |
 – Incomplete | 4 | 7 |