SNP heterozygosity, relatedness and inbreeding of whole genomes from the isolated population of the Faroe Islands

BMC Genomics

Table 3 Inbreeding \(F_{ROH>1.5}\) and SROH, the total sum of ROH in modern and ancient European populations for \(ROHs>1.5\)Mb. The data for the Faroe Islands are from the present study in which: (bas., PLINK default), (adv., PLINK default) refers to our basic and advanced filtering, respectively, and the default ROH parameters used in PLINK except for the minimum ROH length (Additional files 2 and 6). The (bas., PLINK [20]), (adv., PLINK [20]) refers to our basic and advanced filtering, respectively, and the same PLINK parameters used in the reference [20] (Additional files 9 and 10). The SROH are mean values rounded to integers and the remaining numbers are rounded to 3 decimal digits

Population/Region	\({\boldsymbol F}_{\mathbf R\mathbf O\mathbf H\boldsymbol>\mathbf1\boldsymbol.\mathbf5}\)				SROH	Ref.
Population/Region	med	iqr	mean	sd	Mb	Ref.
Faroe Islands (adv., PLINK default)	0.036	0.017	0.042	0.019	120	HG
Faroe Islands (bas., PLINK default)	0.029	0.013	0.035	0.018	101	HG
Faroe Islands (adv., PLINK [20])	0.018	0.011	0.023	0.015	67	HG
Faroe Islands (bas., PLINK [20])	0.018	0.010	0.022	0.014	65	HG
Endogamous Dalmatians			0.013		35	[20]
Endogamous Orcadians			0.011		28	[20]
Croatians			0.007		18	[20]
Mixed Dalmatians			0.006		15	[20]
Mixed Orcadians			0.005		14	[20]
CEU			0.003		8	[20]
Scottish			0.003		7	[20]
Half Orcadians			0.002		6	[20]
CEU			0.004	0.002	13	[26]
FIN			0.009	0.004	26	[26]
GBR			0.006	0.004	17	[26]
IBS			0.006	0.005	18	[26]
TSI			0.005	0.003	13	[26]
Hunter-gatherers	0.063	0.026				[25]
Simple agriculturalists	0.029	0.014				[25]
- West Eurasia	0.029	0.012				[25]
- Central Eurasia	0.020	0.017				[25]
Early comp. agriculturalists	0.025	0.011				[25]
- West Eurasia	0.024	0.010				[25]
- Central Eurasia	0.027	0.011				[25]
Adv. comp. agriculturalists	0.016	0.009				[25]
- West Eurasia	0.021	0.006				[25]
- Central Eurasia	0.015	0.006				[25]
Human Genome Div. Panel	0.007	0.022				[25]
- West Eurasia	0.004	0.005				[25]
- Central Eurasia	0.016	0.034				[25]
European ancestry	0.009		0.011	0.007	32	[27]

ISSN: 1471-2164