Table 2 Gene components of mitochondrial DNA of M. amazonicum
From: In silico prospecting of the mtDNA of Macrobrachium amazonicum from transcriptome data
Gene | Position | Size (bp) | Codon (aa) | Strand (L = light, H = heavy) | aa1 | In2 | |
|---|---|---|---|---|---|---|---|
Start (aa) | Stop | ||||||
COI | 1–1560 | 1560 | ACG (T) | TAG | L | 519 | 0 |
tRNALeu (L1) | 1561–1590 | 30 | L | 0 | |||
COI | 1591–2286 | 696 | CTT (L) | TAA | L | 231 | 0 |
tRNALys | 2285–2354 | 68 | L | 0 | |||
tRNAAsp | 2355–2415 | 61 | L | 0 | |||
ATP8 | 2416–2583 | 168 | TAT (Y) | TAA | L | 55 | -7 |
ATP6 | 2577–3251 | 675 | ATG (M) | TAA | L | 224 | 4 |
COIII | 3256–4044 | 789 | ATG (M) | TAA | L | 262 | 0 |
tRNAGly | 4045–4115 | 71 | L | 0 | |||
ND3 | 4116–4481 | 366 | ATG (M) | TAG | L | 121 | -10 |
tRNAAla | 4472–4534 | 63 | L | -1 | |||
tRNAArg | 4534–4599 | 66 | L | 1 | |||
tRNAAsn | 4601–4665 | 65 | L | 0 | |||
tRNASer (S1) | 4666–4732 | 67 | L | 2 | |||
tRNAGlu | 4733–4801 | 69 | L | -1 | |||
tRNAPhe | 4801–4865 | 65 | L | 0 | |||
ND5 | 4866–6572 | 1707 | ATG (M) | TAA | L | 568 | 0 |
tRNAHis | 6573–6655 | 83 | L | 0 | |||
ND4 | 6656–7983 | 1335 | ATG (M) | TAA | L | 452 | -7 |
ND4L | 7984–8283 | 300 | ATG (M) | TAA | L | 99 | 0 |
tRNAThr | 8284–8338 | 55 | L | -1 | |||
tRNAPro | 8338–8403 | 66 | L | 0 | |||
ND6 | 8404–8931 | 528 | ACT (T) | TAA | L | 175 | -1 |
Cytb | 8931–10067 | 1137 | ATG (M) | TGA | L | 378 | 0 |
tRNASer (S2) | 10068–10158 | 85 | L | 2 | |||
ND1 | 10153–11091 | 939 | ATG (M) | TAG | L | 312 | 0 |
tRNALeu (L2) | 11092–11169 | 78 | L | 0 | |||
16S | 11170–12466 | 1297 | L | 0 | |||
tRNAVal | 12467–12,532 | 66 | L | 0 | |||
12S | 12533–13378 | 846 | L | - - | |||
D-loop | - - | - - | L | - - | |||
tRNAIle* | 13403–13424 | 22 | L | -29 | |||
tRNAGln | 13452–13518 | 67 | H | 181 | |||
tRNAMet | 13698–13767 | 70 | L | 0 | |||
ND2 | 13768–14763 | 996 | ATT(I) | TAA | L | 331 | -2 |
tRNATrp | 14762–14830 | 69 | L | 1 | |||
tRNACys | 14832–14894 | 63 | L | 0 | |||
tRNATyr | 14895–14960 | 66 | L | 0 | |||