Table 3 Pfam domains with major depletions in the genome of R. sphaerocarpa ETNP2018 as compared to the average of all Rhodotorula strains studied
Domain ID | Description | R. sphaerocarpa ETNP2018 | Average | Standard Deviation |
|---|---|---|---|---|
PF07690 | Major Facilitator Superfamily | 101 | 129.7 | 19.0 |
PF00172 | Fungal Zn(2)-Cys(6) binuclear cluster domain | 49 | 55.7 | 11.6 |
PF00106 | Short Chain Dehydrogenase | 37 | 45.3 | 6.1 |
PF13561 | Enoyl-(Acyl carrier protein) reductase | 35 | 44.4 | 6.0 |
PF08659 | KR Domain | 30 | 36.9 | 5.4 |
PF04082 | Fungal specific transcription factor domain | 21 | 29.7 | 4.0 |
PF12937 | F-box-like | 20 | 34.6 | 13.1 |
PF00646 | F-box domain | 14 | 22.2 | 4.8 |
PF01753 | MYND finger | 7 | 24.7 | 15.1 |
PF03171 | 2OG-Fe(II) oxygenase superfamily | 5 | 9.6 | 3.4 |
PF02668 | Taurine catabolism dioxygenase TauD, TfdA family | 5 | 9.9 | 3.6 |
PF01179 | Copper amine oxidase, enzyme domain | 0 | 2.1 | 1.0 |
PF02727 | Copper amine oxidase, N2 domain | 0 | 1.1 | 0.7 |
PF03452 | ANP1 (alpha-1,2-mannosyltransferase) | 0 | 1.7 | 0.7 |
PF02194 | PXA domain | 0 | 1.7 | 0.7 |
PF07683 | Cobalamin synthesis protein cobW C-terminal domain | 0 | 1.7 | 0.6 |