Table 1 Composition of ecDNA detected in single cell ATAC data from COLO320DM cell line
From: ATACAmp: a tool for detecting ecDNA/HSRs from bulk and single-cell ATAC-seq data
Chr_name | Start_site | End_site | Length | Gene |
|---|---|---|---|---|
16 | 33,344,230 | 33,431,230 | 87,000 | TP53TG3,TP53TG3C |
LOC105369266 | ||||
TP53TG3F,TP53TG3E | ||||
TP53TG3B,LOC102723655 | ||||
8 | 130,277,390 | 130,287,390 | 10,000 | ASAP1 |
8 | 128,206,232 | 128,325,232 | 119,000 | |
8 | 127,997,937 | 128,120,937 | 123,000 | MIR1207,PVT1 |
MIR1206 | ||||
16 | 33,293,089 | 33,296,089 | 3000 | |
6 | 256,190 | 383,190 | 127,000 | DUSP22 |
8 | 128,121,842 | 128,204,842 | 83,000 | MIR1208 |
16 | 32,296,519 | 32,301,519 | 5000 | |
8 | 127,816,213 | 127,993,213 | 177,000 | PVT1,TMEM75,MIR1205 |
16 | 32,349,447 | 32,371,447 | 22,000 | |
8 | 135,017,057 | 135,020,057 | 3000 | |
16 | 33,239,097 | 33,242,097 | 3000 | |
8 | 127,437,402 | 127,813,402 | 376,000 | PVT1,MYC,CASC11,CASC8 |
MIR1204 | ||||
22 | 24,665,296 | 24,668,296 | 3000 | |
8 | 128,332,468 | 128,392,468 | 60,000 | |
15 | 20,459,784 | 20,462,784 | 3000 | HERC2P3 |
8 | 128,393,562 | 129,010,562 | 617,000 | LINC00976,LINC00824 |
13 | 28,381,083 | 28,555,083 | 174,000 | FLT1 |