Elucidation of the genetic determination of clutch traits in Chinese local chickens of the Laiwu Black breed

BMC Genomics

Table 3 GWAS and annotations of suggestive SNPs for the AFE

Chr	BP	ALT/REF	Beta	P value	Consequence	Candidate/Nearest gene	PVE
1	7413930	C/T	-8.50	1.3E-07	intron	FRMD4A	6.79%
1	30524767	A/G	8.98	2.6E-07	intron	NELL2	5.54%
6	19003506	T/A	-4.10	4.6E-07	intron	PTPN20	5.80%
6	19039248	A/G	-3.86	1.4E-07	intron	MAPK8	6.18%
6	19039251	T/C	-3.81	1.4E-07	intron	MAPK8	6.21%

Abbreviations: ALT/REF Alternative vs reference allele, Chr Chromosome, BP Physical position, Beta The estimated coefficient

ISSN: 1471-2164