Elucidation of the genetic determination of clutch traits in Chinese local chickens of the Laiwu Black breed

BMC Genomics

Table 4 GWAS and annotations of suggestive SNPs for the BWFE

CHR	BP	ALT/REF	Beta	P value	Consequence	Candidate/Nearest gene	PVE
1	149332781	G/A	-53.86	4.2E-07	intron	GPC5	6.49%
1	171732987	G/A	64.88	3.9E-07	intron	CKAP2	6.03%
1	171732987	G/A	64.88	3.9E-07	upstream	VPS36
1	171732996	G/C	63.62	3.7E-07	intron	CKAP2	6.06%
1	171732996	G/C	63.62	3.7E-07	upstream	VPS36
8	16338421	A/T	69.53	1.8E-07	intron	SH3GLB1	6.25%
18	7998007	T/G	-100.42	5.7E-07	intron	MAP2K6	6.04%

Abbreviations: ALT/REF Alternative vs reference allele, Chr Chromosome, BP Physical position, Beta The estimate coefficient

ISSN: 1471-2164