Table 6 GWAS and annotations of suggestive SNPs for the clutch traits
Trait | CHR | BP | ALT/REF | Bata | PÂ value | Consequence | Candidate/Nearest gene | PVE |
|---|---|---|---|---|---|---|---|---|
LC | 1 | 35178616 | G/A | -8.18 | 7.5E-08 | upstream | IFNG | 7.82% |
LC | 1 | 40548144 | C/T | -7.04 | 1.1E-07 | intron | PPFIA2 | 6.81% |
LC | 3 | 16867987 | C/G | -5.92 | 1.1E-07 | intron | GPCPD1 | 7.09% |
LC | 3 | 34132127 | C/T | -7.01 | 2.0E-07 | intron | SMYD3 | 7.10% |
LC | 4 | 50279449 | T/C | -7.39 | 1.7E-07 | intron | SLC4A4 | 6.12% |
LC | 4 | 56572493 | A/T | -5.96 | 4.5E-07 | intron | CAMK2D | 6.49% |
LC | 4 | 56956942 | G/A | -7.89 | 9.8E-08 | intron | ANK2 | 7.52% |
LC | 8 | 6861178 | A/G | -9.73 | 6.4E-09 | intron | RASAL2 | 9.04% |
LC | 9 | 13586651 | A/G | -7.34 | 2.1E-07 | intron | FGF12 | 6.89% |
LC | 9 | 19708862 | A/G | -7.79 | 2.3E-07 | intron | PLD1 | 6.86% |
LC | 10 | 18641056 | C/A | -7.44 | 4.7E-10 | intron | MEGF11 | 9.32% |
LC | 10 | 18921,595 | A/G | -6.12 | 9.4E-08 | intron | MAP2K1 | 6.87% |
LC | 12 | 15204,994 | T/C | -7.71 | 6.8E-08 | intron | SUCLG2 | 7.61% |
FWLCS | 1 | 167312472 | A/G | -2.26 | 2.0E-07 | intron | VWA8 | 7.06% |
FWLCS | 4 | 82173143 | T/C | -1.86 | 2.9E-08 | intron | HTT | 7.88% |
FWLCS | 10 | 2038843 | A/G | -1.72 | 3.0E-07 | intron | PKLR | 6.45% |
FWLCS | 14 | 6153293 | T/C | -2.23 | 4.7E-07 | upstream | SOX8 | 6.09% |
LWLCE | 1 | 167312472 | A/G | -2.21 | 2.5E-07 | intron | VWA8 | 6.59% |
LWLCE | 4 | 82097182 | A/C | -2.39 | 4.8E-07 | upstream | MSANTD1 | 5.62% |
LNDWEL | 1 | 39566858 | C/T | -14.198 | 1.5E-09 | intron | PAWR | 8.72% |
LNDWEL | 3 | 82310311 | C/T | -17.162 | 1.3E-09 | intron | ASRGL1 | 10.09% |
LNDWEL | 7 | 10368909 | C/T | -14.099 | 7.1E-09 | upstream | PLCL1 | 8.12% |
LNDWEL | 12 | 7864695 | C/T | -13.236 | 2.2E-08 | intron | CACNA2D3 | 7.51% |
LNDWEL | Z | 1719462 | G/A | -11.475 | 8.4E-11 | upstream | SKOR2 | 10.91% |