Table 1 Halomonas genomes available in the GenBank database used in this study, including their basic statistical information. The list is ordered by G + C content (mol%). Strains sequenced in this study, represented in bold, correspond to isolates from Laguna Fragatas. Hven = H. venusta, Hjan = H. janggokensis
Strain designation | Source | Accession number | Size (Mb) | GC (mol%) | CDS | tRNAs | Contigs | N50 Length (Mb) | Drafts ≥ N50 | Coverage (x) | Sequencing technology | Genome status |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
H. beimenensis NTU-111 | Solar saltern (Taiwan) | CP021435.1 | 4.05 | 68.4 | 3,686 | 76 | 1 | 4.05 | 1 | 160 | PacBio | Complete |
H. aestuarii Hb3T | Solar saltern (Korea) | CP018139.1 | 3.54 | 67.9 | 3,236 | 70 | 1 | 3.54 | 1 | 100 | PacBio | Complete |
H. campisalis SS10-MC5T | Alkaline lake (USA) | CP065435.1 | 4.44 | 66.1 | 4,056 | 69 | 47 | 252.6 | 1 | 275 | Illumina | Draft |
H. sulfidoxydans MCCC 1A11059T | Surface sediment (China) | CP053381.1 | 4.49 | 66.0 | 4,071 | 69 | 1 | 4.49 | 1 | 382 | PacBio | Complete |
H. sulfidivorans MCCC 1A13718T | Deep sea sediment (Pacific Ocean) | CP053383.1 | 4.57 | 64.2 | 4,198 | 69 | 1 | 4.57 | 1 | 576 | PacBio | Complete |
H. elongata DSM 2581Â T | Solar salt (Netherlands Antilles) | FN869568.2 | 4.06 | 63.6 | 3,739 | 70 | 1 | 4.06 | 1 | 17.4 | Roche 454 | Complete |
H. chromatireducens AGD 8–3 | Soda soil (Russia) | CP014226.1 | 3.97 | 62.8 | 3,679 | 61 | 1 | 3.97 | 1 | 34 | Illumina | Complete |
H. hydrothermalis Y2 | Pulp mill wastewater (China) | CP023656.1 | 3.93 | 60.2 | 3,573 | 62 | 1 | 3.93 | 1 | 34 | Illumina | Complete |
H. huangheensis BJGMM-B45T | Soil (China) | CP013106.1 | 4.76 | 58.5 | 4,142 | 65 | 1 | 4.76 | 1 | 317 | Illumina/ PacBio | Complete |
H. meridiana SCSIO 43005Â T | Coral reef (China) | CP024621.1 | 3.86 | 58.1 | 3,628 | 61 | 1 | 3.86 | 1 | 100 | PacBio | Complete |
H. piezotolerans NBT06E8T | Deep sea (Marshall Islands) | CP048602.1 | 3.95 | 57.9 | 3,595 | 61 | 1 | 3.95 | 1 | 212 | PacBio | Complete |
H. janggokensis Hjan13 | Saline lake (Mexico) | JAKNQU000000000 | 3.99 | 57.4 | 3,647 | 57 | 19 | 725,804 | 3 | 90 | Illumina | Draft |
H. janggokensis Hjan14 | Saline lake (Mexico) | JAKNQT000000000 | 3.99 | 57.4 | 3,647 | 57 | 19 | 709,144 | 3 | 92 | Illumina | Draft |
H. axialensis Althf1T | Sulfide rock (North America Pacific Ocean) | AP019517.2 | 3.62 | 56.8 | 5,604 | 62 | 1 | 3.62 | 1 | 100 | Oxford Nanopore | Complete |
H. olivaria TYRC17T | Salted olive processing effluents (Morocco) | AP019416.1 | 5.00 | 55.3 | 7,586 | 61 | 1 | 5.00 | 1 | 100 | Oxford Nanopore | Complete |
H. titanicae SOB56 | Sediment (China) | CP059082.1 | 5.28 | 54.6 | 4,839 | 62 | 1 | 5.28 | 1 | 100 | Illumina | Complete |
H. sulfidaeris ATCC BAA-803Â T | Metal sulfide rock (South Pacific Ocean) 1P | AP019514.1 | 4.21 | 53.8 | 7,107 | 62 | 2 | 4.2 | 2 | 100 | Oxford Nanopore | Complete |
H. venusta Hven4 | Saline lake (Mexico) | CP090950 | 4.27 | 52.6 | 3,913 | 61 | 26 | 1 | 2 | 65 | Illumina | Draft |
H. venusta Hven7 | Saline lake (Mexico) | CP090951 | 4.27 | 52.7 | 4,115 | 62 | 27 | 0.88 | 3 | 94 | Illumina | Draft |
H. venusta Hven9 | Saline lake (Mexico) | CP090952 | 4.27 | 52.7 | 3,977 | 58 | 26 | 0.40 | 4 | 56 | Illumina | Draft |
H. venusta Hven10 | Saline lake (Mexico) | JAUYZU000000000 | 4.47 | 52.8 | 4,156 | 30 | 36 | 0.25 | 7 | 57 | Illumina | Draft |
H. venusta DSM 4743Â T | Seawater (USA) | CP066539.1 | 4.28 | 52.8 | 3,816 | 60 | 3 | 4.28 | 1 | 40 | Illumina | Draft |
H. alkaliphila X3 | Marine cage sediment mud (China) | CP024811.1 | 4.03 | 52.7 | 3,636 | 60 | 1 | 4.03 | 1 | 100 | Complete Genomics | Complete |
H. campaniensis LS21 | Sludge of a saline lake (China) | CP007757.1 | 4.07 | 52.6 | 3,656 | 60 | 1 | 4.07 | 1 | 200 | Illumina | Complete |