BMC Genomics

Table 1 Significant and strong LD SNPs associated with ACC in Duroc pigs identified by 50 K chips GWAS

From: Genome-wide association analysis unveils candidate genes and loci associated with aplasia cutis congenita in pigs

SSC^a	SNP ID	Position (bp)^b	MAF	P-value	Nearest gene	Distance (bp)^c
5	5_18403003	18,403,003	0.051	9.72E-5	CSAD	within
5	5_18617273	18,617,273	0.051	6.37E-5	SP1	within
13	13_207176753	207,176,753	0.051	2.25E-5	PFKL	within
13	13_207265708	207,265,708	0.051	2.25E-5	TRPM2	726
13	13_207251317	207,251,317	0.049	2.52E-5	TRPM2	within

^aSus scrofa chromosome
^bSNP position in Ensembl
^cThe SNP located upstream/downstream of the nearest gene

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ISSN: 1471-2164

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