Table 1 Quality control and data statistics for clean reads
Sample | Raw reads | Raw bases | Clean reads | Clean bases | Q20 (%) | GC (%) |
|---|---|---|---|---|---|---|
D0_1 | 52,232,426 | 7,834,863,900 | 51,422,422 | 7,633,255,120 | 97.06 | 40.84 |
D0_2 | 56,707,192 | 8,506,078,800 | 56,167,888 | 8,329,855,042 | 98.06 | 40.69 |
D0_3 | 54,774,270 | 8,216,140,500 | 54,236,606 | 8,033,593,537 | 97.91 | 40.80 |
D3_1 | 50,997,666 | 7,649,649,900 | 50,646,084 | 7,537,888,515 | 98.48 | 39.33 |
D3_2 | 47,079,904 | 7,061,985,600 | 46,774,762 | 6,959,278,275 | 98.49 | 40.00 |
D3_3 | 42,036,766 | 6,305,514,900 | 41,794,852 | 6,213,782,512 | 98.45 | 39.92 |
D7_1 | 56,305,090 | 8,445,763,500 | 55,922,502 | 8,336,197,794 | 97.99 | 42.43 |
D7_2 | 58,735,492 | 8,810,323,800 | 58,307,640 | 8,695,815,340 | 97.97 | 42.24 |
D7_3 | 53,688,932 | 8,053,339,800 | 53,270,318 | 7,952,423,632 | 97.96 | 41.87 |