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Table 1 Possible molecular mechanisms for the observed phenotypes

From: Molecular bases for strong phenotypic effects of single synonymous codon substitutions in the E. coli ccdB toxin gene

Phenotypic category

Notation

Parameter values

Inference

Inactive and Derepressing

I + D

ESCcdB > 1.8 and ESRelE < 1

Misfolded protein

Inactive and Repressing

I + R

ESCcdB > 1.8 and ESRelE > 1

Reduced translational efficiency

Hyperactive and Derepressing

H + D

ESCcdB < 0.7 and ESRelE < 1

Well folded, increased translational efficiency

Hyperactive and Repressing

H + R

ESCcdB < 0.7 and ESRelE > 1

Faster folding kinetics in vivo or slightly increased translational efficiency